RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, human

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-233	ENST00000557529	TAF6	P49848	677 aa		13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	NDST1	P52848	882 aa		13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	STIL	Q15468	1287 aa		13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	ELF2	Q15723	593 aa		13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	SV2C	Q496J9	727 aa		13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	CFAP221	Q4G0U5	840 aa		13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	ZNF618	Q5T7W0	954 aa		13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	FAM43B	Q6ZT52	329 aa	Predicted RBP	13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	UNC93A	Q86WB7	457 aa		13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	TMEM130	Q8N3G9	435 aa		13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	GPR161	Q8N6U8	529 aa	Known RBP	13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	MSANTD4	Q8NCY6	345 aa		13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	TFAP2B	Q92481	460 aa		13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	PGBD4	Q96DM1	585 aa		13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	HES6	Q96HZ4	224 aa		13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	PPP1R10	Q96QC0	940 aa	Known RBP	13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	ZSWIM1	Q9BR11	485 aa		13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	NT5C1A	Q9BXI3	368 aa		13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	ELOVL4	Q9GZR5	314 aa		13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	UNC93B1	Q9H1C4	597 aa		13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	TRPV6	Q9H1D0	765 aa		13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	UBN1	Q9NPG3	1134 aa		13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	GDAP2	Q9NXN4	497 aa		13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	LCMT1	Q9UIC8	334 aa		13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	SNX9	Q9Y5X1	595 aa		13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529	SCIN	Q9Y6U3	715 aa		13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529		V9GYY5	206 aa	Predicted RBP	13.27	□□□□□ -0.29
SHMT2-233	ENST00000557529		A0A0U1RQF3	1178 aa		13.26	□□□□□ -0.29
SHMT2-233	ENST00000557529	KPNA7	A9QM74	516 aa		13.26	□□□□□ -0.29
SHMT2-233	ENST00000557529	KCNK3	O14649	394 aa		13.26	□□□□□ -0.29
SHMT2-233	ENST00000557529	PTGES	O14684	152 aa		13.26	□□□□□ -0.29
SHMT2-233	ENST00000557529	PPEF2	O14830	753 aa		13.26	□□□□□ -0.29
SHMT2-233	ENST00000557529	ATMIN	O43313	823 aa	Predicted RBP	13.26	□□□□□ -0.29
SHMT2-233	ENST00000557529	TFRC	P02786	760 aa	Known RBP	13.26	□□□□□ -0.29
SHMT2-233	ENST00000557529	FAM163B	P0C2L3	166 aa		13.26	□□□□□ -0.29
SHMT2-233	ENST00000557529	RRM1	P23921	792 aa		13.26	□□□□□ -0.29
SHMT2-233	ENST00000557529	CXCR5	P32302	372 aa		13.26	□□□□□ -0.29
SHMT2-233	ENST00000557529	NAA30	Q147X3	362 aa	Predicted RBP	13.26	□□□□□ -0.29
SHMT2-233	ENST00000557529	SGO2	Q562F6	1265 aa		13.26	□□□□□ -0.29
SHMT2-233	ENST00000557529	MMS22L	Q6ZRQ5	1243 aa		13.26	□□□□□ -0.29
SHMT2-233	ENST00000557529	ANKRD7	Q92527	254 aa		13.26	□□□□□ -0.29
SHMT2-233	ENST00000557529	HEXIM2	Q96MH2	286 aa	Known RBP	13.26	□□□□□ -0.29
SHMT2-233	ENST00000557529	PSMB7	Q99436	277 aa		13.26	□□□□□ -0.29
SHMT2-233	ENST00000557529	C11orf70	Q9BRQ4	267 aa		13.26	□□□□□ -0.29
SHMT2-233	ENST00000557529	GOLPH3	Q9H4A6	298 aa		13.26	□□□□□ -0.29
SHMT2-233	ENST00000557529	PAK6	Q9NQU5	681 aa	Predicted RBP	13.26	□□□□□ -0.29
SHMT2-233	ENST00000557529	PACSIN2	Q9UNF0	486 aa	Predicted RBP	13.26	□□□□□ -0.29
SHMT2-233	ENST00000557529	ALG6	Q9Y672	507 aa		13.26	□□□□□ -0.29
SHMT2-233	ENST00000557529	FAM170A	A1A519	330 aa		13.25	□□□□□ -0.29
SHMT2-233	ENST00000557529	TH	P07101	528 aa		13.25	□□□□□ -0.29
SHMT2-233	ENST00000557529	MLH1	P40692	756 aa		13.25	□□□□□ -0.29
SHMT2-233	ENST00000557529	CDK7	P50613	346 aa		13.25	□□□□□ -0.29
SHMT2-233	ENST00000557529	SOX4	Q06945	474 aa	Predicted RBP	13.25	□□□□□ -0.29
SHMT2-233	ENST00000557529	PTP4A2	Q12974	167 aa		13.25	□□□□□ -0.29
SHMT2-233	ENST00000557529	BFSP2	Q13515	415 aa		13.25	□□□□□ -0.29
SHMT2-233	ENST00000557529	MESD	Q14696	234 aa		13.25	□□□□□ -0.29
SHMT2-233	ENST00000557529	CLUL1	Q15846	466 aa		13.25	□□□□□ -0.29
SHMT2-233	ENST00000557529	CNGA2	Q16280	664 aa		13.25	□□□□□ -0.29
SHMT2-233	ENST00000557529	PLEKHA7	Q6IQ23	1121 aa		13.25	□□□□□ -0.29
SHMT2-233	ENST00000557529	ERICH1	Q86X53	443 aa		13.25	□□□□□ -0.29
SHMT2-233	ENST00000557529	UBL4B	Q8N7F7	174 aa		13.25	□□□□□ -0.29
SHMT2-233	ENST00000557529	C1orf131	Q8NDD1	294 aa	Known RBP	13.25	□□□□□ -0.29
SHMT2-233	ENST00000557529	ZFP42	Q96MM3	310 aa		13.25	□□□□□ -0.29
SHMT2-233	ENST00000557529	TWNK	Q96RR1	684 aa		13.25	□□□□□ -0.29
SHMT2-233	ENST00000557529	GAD1	Q99259	594 aa		13.25	□□□□□ -0.29
SHMT2-233	ENST00000557529	ADAM2	Q99965	735 aa		13.25	□□□□□ -0.29
SHMT2-233	ENST00000557529	WNT8A	Q9H1J5	351 aa		13.25	□□□□□ -0.29
SHMT2-233	ENST00000557529	PARVA	Q9NVD7	372 aa		13.25	□□□□□ -0.29
SHMT2-233	ENST00000557529	HMGXB4	Q9UGU5	601 aa		13.25	□□□□□ -0.29
SHMT2-233	ENST00000557529	STRIP2	Q9ULQ0	834 aa		13.25	□□□□□ -0.29
SHMT2-233	ENST00000557529	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	13.25	□□□□□ -0.29
SHMT2-233	ENST00000557529	FRMPD3	Q5JV73	1810 aa		13.25	□□□□□ -0.29
SHMT2-233	ENST00000557529	PDCD11	Q14690	1871 aa	Known RBP	13.25	□□□□□ -0.29
SHMT2-233	ENST00000557529	ARL5C	A6NH57	179 aa		13.24	□□□□□ -0.29
SHMT2-233	ENST00000557529	TMEM110-MUSTN1	A8MSY1	372 aa		13.24	□□□□□ -0.29
SHMT2-233	ENST00000557529	MYO1F	O00160	1098 aa		13.24	□□□□□ -0.29
SHMT2-233	ENST00000557529		O00370	1275 aa		13.24	□□□□□ -0.29
SHMT2-233	ENST00000557529	PDE2A	O00408	941 aa	Predicted RBP	13.24	□□□□□ -0.29
SHMT2-233	ENST00000557529	MGEA5	O60502	916 aa		13.24	□□□□□ -0.29
SHMT2-233	ENST00000557529	TUBB	P07437	444 aa		13.24	□□□□□ -0.29
SHMT2-233	ENST00000557529	SSTR3	P32745	418 aa	Predicted RBP	13.24	□□□□□ -0.29
SHMT2-233	ENST00000557529	RPL9	P32969	192 aa	Known RBP	13.24	□□□□□ -0.29
SHMT2-233	ENST00000557529	SLC1A1	P43005	524 aa		13.24	□□□□□ -0.29
SHMT2-233	ENST00000557529	DNA2	P51530	1060 aa		13.24	□□□□□ -0.29
SHMT2-233	ENST00000557529	TAP1	Q03518	808 aa		13.24	□□□□□ -0.29
SHMT2-233	ENST00000557529	CCDC70	Q6NSX1	233 aa		13.24	□□□□□ -0.29
SHMT2-233	ENST00000557529	DENND1B	Q6P3S1	775 aa		13.24	□□□□□ -0.29
SHMT2-233	ENST00000557529	TRAF7	Q6Q0C0	670 aa		13.24	□□□□□ -0.29
SHMT2-233	ENST00000557529	DPH6	Q7L8W6	267 aa		13.24	□□□□□ -0.29
SHMT2-233	ENST00000557529	LIMS2	Q7Z4I7	341 aa		13.24	□□□□□ -0.29
SHMT2-233	ENST00000557529	TOP6BL	Q8N6T0	577 aa		13.24	□□□□□ -0.29
SHMT2-233	ENST00000557529	ACTRT1	Q8TDG2	376 aa		13.24	□□□□□ -0.29
SHMT2-233	ENST00000557529	DEFB118	Q96PH6	123 aa		13.24	□□□□□ -0.29
SHMT2-233	ENST00000557529	MRPL45	Q9BRJ2	306 aa	Known RBP	13.24	□□□□□ -0.29
SHMT2-233	ENST00000557529	MIS12	Q9H081	205 aa		13.24	□□□□□ -0.29
SHMT2-233	ENST00000557529	CARD9	Q9H257	536 aa		13.24	□□□□□ -0.29
SHMT2-233	ENST00000557529	TSPYL2	Q9H2G4	693 aa	Predicted RBP	13.24	□□□□□ -0.29
SHMT2-233	ENST00000557529	SNX25	Q9H3E2	840 aa		13.24	□□□□□ -0.29
SHMT2-233	ENST00000557529	RSAD1	Q9HA92	442 aa		13.24	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms