RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 GJB4Q9NTQ9 266 aa10.53□□□□□ -0.72
SCFD1-215ENST00000555259 SLC27A5Q9Y2P5 690 aa10.53□□□□□ -0.72
SCFD1-215ENST00000555259 M0QZQ0 153 aa10.52□□□□□ -0.72
SCFD1-215ENST00000555259 SOAT2O75908 522 aa10.52□□□□□ -0.72
SCFD1-215ENST00000555259 CYP11B2P19099 503 aa10.52□□□□□ -0.72
SCFD1-215ENST00000555259 HSPA4P34932 840 aa10.52□□□□□ -0.72
SCFD1-215ENST00000555259 GALK1P51570 392 aa10.52□□□□□ -0.72
SCFD1-215ENST00000555259 AMPD2Q01433 879 aa10.52□□□□□ -0.72
SCFD1-215ENST00000555259 LMAN2Q12907 356 aa10.52□□□□□ -0.72
SCFD1-215ENST00000555259 GPR17Q13304 367 aa10.52□□□□□ -0.72
SCFD1-215ENST00000555259 TOB2Q14106 344 aaPredicted RBP10.52□□□□□ -0.72
SCFD1-215ENST00000555259 COL28A1Q2UY09 1125 aa10.52□□□□□ -0.72
SCFD1-215ENST00000555259 ZNF568Q3ZCX4 644 aa10.52□□□□□ -0.72
SCFD1-215ENST00000555259 USP39Q53GS9 565 aaKnown RBP10.52□□□□□ -0.72
SCFD1-215ENST00000555259 BMP2KLQ5H9B9 411 aa10.52□□□□□ -0.72
SCFD1-215ENST00000555259 NAIF1Q69YI7 327 aaPredicted RBP10.52□□□□□ -0.72
SCFD1-215ENST00000555259 CPLX2Q6PUV4 134 aaKnown RBP10.52□□□□□ -0.72
SCFD1-215ENST00000555259 CATSPER3Q86XQ3 398 aa10.52□□□□□ -0.72
SCFD1-215ENST00000555259 TTC9BQ8N6N2 239 aa10.52□□□□□ -0.72
SCFD1-215ENST00000555259 ATAD1Q8NBU5 361 aa10.52□□□□□ -0.72
SCFD1-215ENST00000555259 ACAP3Q96P50 834 aa10.52□□□□□ -0.72
SCFD1-215ENST00000555259 NACC1Q96RE7 527 aa10.52□□□□□ -0.72
SCFD1-215ENST00000555259 SLC46A2Q9BY10 475 aa10.52□□□□□ -0.72
SCFD1-215ENST00000555259 OXCT2Q9BYC2 517 aaPredicted RBP10.52□□□□□ -0.72
SCFD1-215ENST00000555259 PTPRHQ9HD43 1115 aa10.52□□□□□ -0.72
SCFD1-215ENST00000555259 EVLQ9UI08 416 aaPredicted RBP10.52□□□□□ -0.72
SCFD1-215ENST00000555259 TIMM13Q9Y5L4 95 aaPredicted RBP10.52□□□□□ -0.72
SCFD1-215ENST00000555259 THADAQ6YHU6 1953 aa10.52□□□□□ -0.73
SCFD1-215ENST00000555259 MTMR11A4FU01 709 aa10.52□□□□□ -0.73
SCFD1-215ENST00000555259 H0Y626 953 aa10.52□□□□□ -0.73
SCFD1-215ENST00000555259 K7ERI5 159 aa10.52□□□□□ -0.73
SCFD1-215ENST00000555259 TRIM16O95361 564 aa10.52□□□□□ -0.73
SCFD1-215ENST00000555259 BCKDHBP21953 392 aa10.52□□□□□ -0.73
SCFD1-215ENST00000555259 U2AF2P26368 475 aaKnown RBP eCLIP10.52□□□□□ -0.732e-8■■■■□ 20.1
SCFD1-215ENST00000555259 MAPK8P45983 427 aa10.52□□□□□ -0.73
SCFD1-215ENST00000555259 TRIM61Q5EBN2 209 aa10.52□□□□□ -0.73
SCFD1-215ENST00000555259 PIP4P1Q86T03 277 aa10.52□□□□□ -0.73
SCFD1-215ENST00000555259 ITIH5Q86UX2 942 aa10.52□□□□□ -0.73
SCFD1-215ENST00000555259 PIGKQ92643 395 aa10.52□□□□□ -0.73
SCFD1-215ENST00000555259 EZH1Q92800 747 aaPredicted RBP10.52□□□□□ -0.73
SCFD1-215ENST00000555259 ACDQ96AP0 544 aa10.52□□□□□ -0.73
SCFD1-215ENST00000555259 ZNF274Q96GC6 653 aaPredicted RBP10.52□□□□□ -0.73
SCFD1-215ENST00000555259 IFT74Q96LB3 600 aa10.52□□□□□ -0.73
SCFD1-215ENST00000555259 ACO2Q99798 780 aaKnown RBP10.52□□□□□ -0.73
SCFD1-215ENST00000555259 P2RY13Q9BPV8 354 aa10.52□□□□□ -0.73
SCFD1-215ENST00000555259 TPSD1Q9BZJ3 242 aa10.52□□□□□ -0.73
SCFD1-215ENST00000555259 IL21Q9HBE4 155 aa10.52□□□□□ -0.73
SCFD1-215ENST00000555259 POLD4Q9HCU8 107 aa10.52□□□□□ -0.73
SCFD1-215ENST00000555259 TUFT1Q9NNX1 390 aa10.52□□□□□ -0.73
SCFD1-215ENST00000555259 TUBGCP4Q9UGJ1 667 aa10.52□□□□□ -0.73
SCFD1-215ENST00000555259 CCL26Q9Y258 94 aa10.52□□□□□ -0.73
SCFD1-215ENST00000555259 MAST4O15021 2626 aa10.51□□□□□ -0.73
SCFD1-215ENST00000555259 ACACAQ13085 2346 aa10.51□□□□□ -0.73
SCFD1-215ENST00000555259 ARHGEF35A5YM69 484 aa10.51□□□□□ -0.73
SCFD1-215ENST00000555259 OR6C75A6NL08 312 aa10.51□□□□□ -0.73
SCFD1-215ENST00000555259 NEMFO60524 1076 aa10.51□□□□□ -0.73
SCFD1-215ENST00000555259 MED24O75448 989 aa10.51□□□□□ -0.73
SCFD1-215ENST00000555259 ARSAP15289 507 aa10.51□□□□□ -0.73
SCFD1-215ENST00000555259 XBP1P17861 261 aa10.51□□□□□ -0.73
SCFD1-215ENST00000555259 PSMA5P28066 241 aa10.51□□□□□ -0.73
SCFD1-215ENST00000555259 CDC25CP30307 473 aa10.51□□□□□ -0.73
SCFD1-215ENST00000555259 DHPSP49366 369 aaPredicted RBP10.51□□□□□ -0.73
SCFD1-215ENST00000555259 STK3Q13188 491 aa10.51□□□□□ -0.73
SCFD1-215ENST00000555259 SEMA3BQ13214 749 aa10.51□□□□□ -0.73
SCFD1-215ENST00000555259 NR5A1Q13285 461 aa10.51□□□□□ -0.73
SCFD1-215ENST00000555259 CMTM8Q8IZV2 173 aa10.51□□□□□ -0.73
SCFD1-215ENST00000555259 CHCHD4Q8N4Q1 142 aa10.51□□□□□ -0.73
SCFD1-215ENST00000555259 TSTD1Q8NFU3 115 aa10.51□□□□□ -0.73
SCFD1-215ENST00000555259 BBC3Q96PG8 261 aaPredicted RBP10.51□□□□□ -0.73
SCFD1-215ENST00000555259 GCNAQ96QF7 691 aa10.51□□□□□ -0.73
SCFD1-215ENST00000555259 MTMR9Q96QG7 549 aa10.51□□□□□ -0.73
SCFD1-215ENST00000555259 LPIN3Q9BQK8 851 aa10.51□□□□□ -0.73
SCFD1-215ENST00000555259 LARP6Q9BRS8 491 aaKnown RBP10.51□□□□□ -0.73
SCFD1-215ENST00000555259 TBX20Q9UMR3 447 aa10.51□□□□□ -0.73
SCFD1-215ENST00000555259 CITO14578 2027 aa10.5□□□□□ -0.73
SCFD1-215ENST00000555259 UPK3BL1B0FP48 263 aa10.5□□□□□ -0.73
SCFD1-215ENST00000555259 UPK3BL2E5RIL1 263 aa10.5□□□□□ -0.73
SCFD1-215ENST00000555259 ABLIM1O14639 778 aa10.5□□□□□ -0.73
SCFD1-215ENST00000555259 LARGE1O95461 756 aa10.5□□□□□ -0.73
SCFD1-215ENST00000555259 SEC24BO95487 1268 aa10.5□□□□□ -0.73
SCFD1-215ENST00000555259 MCF2P10911 925 aa10.5□□□□□ -0.73
SCFD1-215ENST00000555259 ENGP17813 658 aa10.5□□□□□ -0.73
SCFD1-215ENST00000555259 PROZP22891 400 aa10.5□□□□□ -0.73
SCFD1-215ENST00000555259 GJA4P35212 333 aa10.5□□□□□ -0.73
SCFD1-215ENST00000555259 RDXP35241 583 aaKnown RBP10.5□□□□□ -0.73
SCFD1-215ENST00000555259 AARSP49588 968 aaKnown RBP eCLIP10.5□□□□□ -0.73
SCFD1-215ENST00000555259 SCAPQ12770 1279 aa10.5□□□□□ -0.73
SCFD1-215ENST00000555259 MYBPC2Q14324 1141 aa10.5□□□□□ -0.73
SCFD1-215ENST00000555259 USP37Q86T82 979 aa10.5□□□□□ -0.73
SCFD1-215ENST00000555259 RASSF3Q86WH2 238 aa10.5□□□□□ -0.73
SCFD1-215ENST00000555259 TMEM130Q8N3G9 435 aa10.5□□□□□ -0.73
SCFD1-215ENST00000555259 RIN3Q8TB24 985 aa10.5□□□□□ -0.73
SCFD1-215ENST00000555259 USP13Q92995 863 aaPredicted RBP10.5□□□□□ -0.73
SCFD1-215ENST00000555259 TNFRSF25Q93038 417 aa10.5□□□□□ -0.73
SCFD1-215ENST00000555259 EXOC4Q96A65 974 aa10.5□□□□□ -0.73
SCFD1-215ENST00000555259 NUSAP1Q9BXS6 441 aaKnown RBP10.5□□□□□ -0.73
SCFD1-215ENST00000555259 MRPL4Q9BYD3 311 aaKnown RBP10.5□□□□□ -0.73
SCFD1-215ENST00000555259 ANKFY1Q9P2R3 1169 aa10.5□□□□□ -0.73
SCFD1-215ENST00000555259 HSFX1Q9UBD0 423 aa10.5□□□□□ -0.73
SCFD1-215ENST00000555259 ZMYM5Q9UJ78 669 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms