RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 GLRA4Q5JXX5 417 aa12.41□□□□□ -0.42
SHMT2-212ENST00000554467 MON1BQ7L1V2 547 aa12.41□□□□□ -0.42
SHMT2-212ENST00000554467 EMID1Q96A84 441 aaPredicted RBP12.41□□□□□ -0.42
SHMT2-212ENST00000554467 FAM118BQ9BPY3 351 aa12.41□□□□□ -0.42
SHMT2-212ENST00000554467 SDCBP2Q9H190 292 aa12.41□□□□□ -0.42
SHMT2-212ENST00000554467 CES2O00748 559 aa12.4□□□□□ -0.42
SHMT2-212ENST00000554467 CYP1A1P04798 512 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-212ENST00000554467 HPDP32754 393 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-212ENST00000554467 BPIFB4P59827 614 aa12.4□□□□□ -0.42
SHMT2-212ENST00000554467 RPL7AP62424 266 aaKnown RBP12.4□□□□□ -0.42
SHMT2-212ENST00000554467 CARD9Q9H257 536 aa12.4□□□□□ -0.42
SHMT2-212ENST00000554467 SLC40A1Q9NP59 571 aa12.4□□□□□ -0.42
SHMT2-212ENST00000554467 GDF3Q9NR23 364 aa12.4□□□□□ -0.42
SHMT2-212ENST00000554467 TRIP11Q15643 1979 aa12.4□□□□□ -0.42
SHMT2-212ENST00000554467 UNCXA6NJT0 531 aa12.4□□□□□ -0.42
SHMT2-212ENST00000554467 NPTXRO95502 500 aa12.4□□□□□ -0.42
SHMT2-212ENST00000554467 POLR2BP30876 1174 aaKnown RBP12.4□□□□□ -0.42
SHMT2-212ENST00000554467 CENPCQ03188 943 aa12.4□□□□□ -0.42
SHMT2-212ENST00000554467 ENPEPQ07075 957 aa12.4□□□□□ -0.42
SHMT2-212ENST00000554467 MORN1Q5T089 497 aa12.4□□□□□ -0.42
SHMT2-212ENST00000554467 IQSEC1Q6DN90 963 aa12.4□□□□□ -0.42
SHMT2-212ENST00000554467 DNAJB3Q8WWF6 145 aa12.4□□□□□ -0.42
SHMT2-212ENST00000554467 TWNKQ96RR1 684 aa12.4□□□□□ -0.42
SHMT2-212ENST00000554467 EIF2AQ9BY44 585 aaKnown RBP12.4□□□□□ -0.42
SHMT2-212ENST00000554467 MKI67P46013 3256 aaKnown RBP12.4□□□□□ -0.42
SHMT2-212ENST00000554467 PIK3R2O00459 728 aa12.4□□□□□ -0.42
SHMT2-212ENST00000554467 TCF4P15884 667 aa12.4□□□□□ -0.42
SHMT2-212ENST00000554467 CTGFP29279 349 aa12.4□□□□□ -0.42
SHMT2-212ENST00000554467 KCNJ1P48048 391 aa12.4□□□□□ -0.42
SHMT2-212ENST00000554467 HADHBP55084 474 aaKnown RBP12.4□□□□□ -0.42
SHMT2-212ENST00000554467 SF3A3Q12874 501 aaKnown RBP eCLIP12.4□□□□□ -0.426e-8■■□□□ 12.4
SHMT2-212ENST00000554467 GLE1Q53GS7 698 aaKnown RBP12.4□□□□□ -0.42
SHMT2-212ENST00000554467 SAPCD2Q86UD0 394 aa12.4□□□□□ -0.42
SHMT2-212ENST00000554467 CD101Q93033 1021 aa12.4□□□□□ -0.42
SHMT2-212ENST00000554467 ACSF2Q96CM8 615 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-212ENST00000554467 PTPN22Q9Y2R2 807 aa12.4□□□□□ -0.42
SHMT2-212ENST00000554467 ANK1P16157 1881 aa12.4□□□□□ -0.43
SHMT2-212ENST00000554467 RDXP35241 583 aaKnown RBP12.39□□□□□ -0.43
SHMT2-212ENST00000554467 FLT3P36888 993 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 GUCY1A3Q02108 690 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 CFAP58Q5T655 872 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 HERPUD2Q9BSE4 406 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 HEMGNQ9BXL5 484 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 ARHGAP39Q9C0H5 1083 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 SNTG2Q9NY99 539 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 UVRAGQ9P2Y5 699 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 AGAP1Q9UPQ3 857 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 TREHO43280 583 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 B4GALT4O60513 344 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 ZNF865P0CJ78 1059 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-212ENST00000554467 ZNF132P52740 706 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 SEC24CP53992 1094 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 EPHB4P54760 987 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 SNX1Q13596 522 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 CRYMQ14894 314 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 DENND1BQ6P3S1 775 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 B4GALNT4Q76KP1 1039 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 CATSPER4Q7RTX7 472 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 YTHDF3Q7Z739 585 aaKnown RBP12.39□□□□□ -0.43
SHMT2-212ENST00000554467 UBR7Q8N806 425 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 GOLGA8SH3BPF8 625 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 PPEF2O14830 753 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 MTA2O94776 668 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 CYP2C9P11712 490 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 AKAP5P24588 427 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 LACTBP83111 547 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-212ENST00000554467 GRIK3Q13003 919 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 CRHR2Q13324 411 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 MAMLD1Q13495 774 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 ATP13A4Q4VNC1 1196 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 ZNF667Q5HYK9 610 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 TMEM40Q8WWA1 233 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 ATG4AQ8WYN0 398 aa12.39□□□□□ -0.43
SHMT2-212ENST00000554467 GNEQ9Y223 722 aaKnown RBP12.39□□□□□ -0.43
SHMT2-212ENST00000554467 TNPO2O14787 897 aaKnown RBP12.38□□□□□ -0.43
SHMT2-212ENST00000554467 TAS2R40P59535 323 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 SEL1L2Q5TEA6 688 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 TTC27Q6P3X3 843 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 ZNF677Q86XU0 584 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 WDTC1Q8N5D0 677 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 PRELID2Q8N945 189 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 ZNF483Q8TF39 744 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-212ENST00000554467 C1orf54Q8WWF1 131 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 KIF12Q96FN5 646 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 FAM81BQ96LP2 452 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 ZIM3Q96PE6 472 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 RPS6KC1Q96S38 1066 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 KLK14Q9P0G3 267 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-212ENST00000554467 MYADML2A6NDP7 307 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 MIF4GDA9UHW6 222 aaKnown RBP12.38□□□□□ -0.43
SHMT2-212ENST00000554467 TLR3O15455 904 aaKnown RBP12.38□□□□□ -0.43
SHMT2-212ENST00000554467 MCF2P10911 925 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 LSP1P33241 339 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 CTNNA1P35221 906 aaKnown RBP12.38□□□□□ -0.43
SHMT2-212ENST00000554467 AP3M2P53677 418 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 PAK2Q13177 524 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 TMEM132DQ14C87 1099 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 ZFYVE27Q5T4F4 411 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 CHADLQ6NUI6 762 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms