RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 SNX9Q9Y5X1 595 aa12.47□□□□□ -0.41
CCDC88C-208ENST00000554165 MTMR11A4FU01 709 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 LRRIQ3A6PVS8 624 aaPredicted RBP12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 RHOP08100 348 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 CCR2P41597 374 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 PRCPP42785 496 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 MYL6P60660 151 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 MYBPC2Q14324 1141 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 SURF1Q15526 300 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 TMEM31Q5JXX7 168 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 C1orf220Q5T0J3 134 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 CEP135Q66GS9 1140 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 CENPPQ6IPU0 288 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 METTL23Q86XA0 190 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 SLC9A9Q8IVB4 645 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 GUF1Q8N442 669 aaKnown RBP12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 LRRC52Q8N7C0 313 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 SPATA20Q8TB22 786 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 GOLGA5Q8TBA6 731 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 PARD3BQ8TEW8 1205 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 EDAQ92838 391 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 CCDC47Q96A33 483 aaKnown RBP12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 ACSF2Q96CM8 615 aaPredicted RBP12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 ZNF560Q96MR9 790 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 FNBP1Q96RU3 617 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 CORO1BQ9BR76 489 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 RPP25Q9BUL9 199 aaKnown RBP12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 C1QTNF1Q9BXJ1 281 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 ZCWPW1Q9H0M4 648 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 GDAP2Q9NXN4 497 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 TRAF3IP3Q9Y228 551 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 YIPF1Q9Y548 306 aa12.46□□□□□ -0.41
CCDC88C-208ENST00000554165 NARSO43776 548 aaKnown RBP12.45□□□□□ -0.42
CCDC88C-208ENST00000554165 ATP2C2O75185 946 aa12.45□□□□□ -0.42
CCDC88C-208ENST00000554165 AKAP3O75969 853 aa12.45□□□□□ -0.42
CCDC88C-208ENST00000554165 VNN1O95497 513 aa12.45□□□□□ -0.42
CCDC88C-208ENST00000554165 LRG1P02750 347 aa12.45□□□□□ -0.42
CCDC88C-208ENST00000554165 LAMP2P13473 410 aa12.45□□□□□ -0.42
CCDC88C-208ENST00000554165 GJA1P17302 382 aa12.45□□□□□ -0.42
CCDC88C-208ENST00000554165 NR2F2P24468 414 aa12.45□□□□□ -0.42
CCDC88C-208ENST00000554165 PNPLA4P41247 253 aa12.45□□□□□ -0.42
CCDC88C-208ENST00000554165 PMS1P54277 932 aaKnown RBP12.45□□□□□ -0.42
CCDC88C-208ENST00000554165 PABPC1LQ4VXU2 614 aaKnown RBP12.45□□□□□ -0.42
CCDC88C-208ENST00000554165 ZCWPW2Q504Y3 356 aa12.45□□□□□ -0.42
CCDC88C-208ENST00000554165 TDRD10Q5VZ19 366 aaKnown RBP12.45□□□□□ -0.42
CCDC88C-208ENST00000554165 LIMS2Q7Z4I7 341 aa12.45□□□□□ -0.42
CCDC88C-208ENST00000554165 STKLD1Q8NE28 680 aa12.45□□□□□ -0.42
CCDC88C-208ENST00000554165 KBTBD7Q8WVZ9 684 aa12.45□□□□□ -0.42
CCDC88C-208ENST00000554165 FGF13Q92913 245 aa12.45□□□□□ -0.42
CCDC88C-208ENST00000554165 LPIN3Q9BQK8 851 aa12.45□□□□□ -0.42
CCDC88C-208ENST00000554165 DNAJC25Q9H1X3 360 aa12.45□□□□□ -0.42
CCDC88C-208ENST00000554165 KCNK12Q9HB15 430 aa12.45□□□□□ -0.42
CCDC88C-208ENST00000554165 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.45□□□□□ -0.425e-14■■■■■ 211.5
CCDC88C-208ENST00000554165 DSEQ9UL01 958 aa12.45□□□□□ -0.42
CCDC88C-208ENST00000554165 NME7Q9Y5B8 376 aa12.45□□□□□ -0.42
CCDC88C-208ENST00000554165 BIN1O00499 593 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 CALUO43852 315 aaPredicted RBP12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 GPR37L1O60883 481 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 HUS1O60921 280 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 PRPF40AO75400 957 aaKnown RBP12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 PDGFBP01127 241 aaPredicted RBP12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 C4BPAP04003 597 aaKnown RBP12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 POU2F2P09086 479 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 PDGFRBP09619 1106 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 TRIM49P0CI25 452 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 TRIM49CP0CI26 452 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 CD44P16070 742 aaKnown RBP12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 CEBPBP17676 345 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 BMP6P22004 513 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 PAX3P23760 479 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 LMO2P25791 158 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 GPR15P49685 360 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 SDHAF4Q5VUM1 108 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 PARM1Q6UWI2 310 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 TRIM67Q6ZTA4 783 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 HFE2Q6ZVN8 426 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 NPAS3Q8IXF0 933 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 ADGRF2Q8IZF7 708 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 THEM5Q8N1Q8 247 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 PLCD3Q8N3E9 789 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 GPR152Q8TDT2 470 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 SMARCE1Q969G3 411 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 MCRS1Q96EZ8 462 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 TIGD1Q96MW7 591 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 GSDMAQ96QA5 445 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 PKMYT1Q99640 499 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 SEPT5Q99719 369 aaPredicted RBP12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 XYLT2Q9H1B5 865 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 DDX43Q9NXZ2 648 aaKnown RBP12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 ABI2Q9NYB9 513 aaPredicted RBP12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 EPS15L1Q9UBC2 864 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 MAN1B1Q9UKM7 699 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 CDH7Q9ULB5 785 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 SORCS3Q9UPU3 1222 aa12.44□□□□□ -0.42
CCDC88C-208ENST00000554165 MYBPHLA2RUH7 354 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 TRIM49BA6NDI0 452 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 TMEM221A6NGB7 291 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 M0R296 226 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 GABRDO14764 452 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms