RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 SLITRK1Q96PX8 696 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 MSTO1Q9BUK6 570 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 C17orf75Q9HAS0 396 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 ZNRF3Q9ULT6 936 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 ARL2BPQ9Y2Y0 163 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 CENPFP49454 3210 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 A0A1W2PPM1 405 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 DNALI1O14645 258 aaPredicted RBP7.93□□□□□ -1.14
LIMA1-213ENST00000552720 BRD2P25440 801 aaKnown RBP7.93□□□□□ -1.14
LIMA1-213ENST00000552720 HMGCS2P54868 508 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 BPIFB4P59827 614 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 DYNLT1P63172 113 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 STRN3Q13033 797 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 TMEM132BQ14DG7 1078 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 EFTUD2Q15029 972 aaKnown RBP eCLIP7.93□□□□□ -1.14
LIMA1-213ENST00000552720 WDR72Q3MJ13 1102 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 SAMD7Q7Z3H4 446 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 PHF13Q86YI8 300 aaPredicted RBP7.93□□□□□ -1.14
LIMA1-213ENST00000552720 ANKMY2Q8IV38 441 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 NIM1KQ8IY84 436 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 ZCCHC9Q8N567 271 aaKnown RBP7.93□□□□□ -1.14
LIMA1-213ENST00000552720 GIMAP7Q8NHV1 300 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 SENP7Q9BQF6 1050 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 TMEM121Q9BTD3 319 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 PITPNM3Q9BZ71 974 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 KIAA1586Q9HCI6 787 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 MRPL47Q9HD33 250 aaKnown RBP7.93□□□□□ -1.14
LIMA1-213ENST00000552720 MAP3K20Q9NYL2 800 aaKnown RBP7.93□□□□□ -1.14
LIMA1-213ENST00000552720 NKIRAS1Q9NYS0 192 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 TJP2Q9UDY2 1190 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 ZNF214Q9UL59 606 aaPredicted RBP7.93□□□□□ -1.14
LIMA1-213ENST00000552720 CNTNAP2Q9UHC6 1331 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 K7ERI5 159 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 ASMTLO95671 621 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 IFNB1P01574 187 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 FGFR1P11362 822 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 ELF1P32519 619 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 RPA3P35244 121 aaPredicted RBP7.92□□□□□ -1.14
LIMA1-213ENST00000552720 MYO1EQ12965 1108 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 NCOA4Q13772 614 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 ZNF268Q14587 947 aaPredicted RBP7.92□□□□□ -1.14
LIMA1-213ENST00000552720 STAT4Q14765 748 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 MTFR1Q15390 333 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 SLC1A5Q15758 541 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 SMTNL2Q2TAL5 461 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 SCARA5Q6ZMJ2 495 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 ARHGEF18Q6ZSZ5 1173 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 ZBTB33Q86T24 672 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 TRABD2AQ86V40 505 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 ZBED8Q8IZ13 594 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 RTKN2Q8IZC4 609 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 AGBL3Q8NEM8 1001 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 REPS2Q8NFH8 660 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 RDM1Q8NG50 284 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 MAGEC3Q8TD91 643 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 TMEM237Q96Q45 408 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 C12orf65Q9H3J6 166 aaKnown RBP7.92□□□□□ -1.14
LIMA1-213ENST00000552720 RXFP1Q9HBX9 757 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 POLR2AP24928 1970 aaKnown RBP7.92□□□□□ -1.14
LIMA1-213ENST00000552720 CFAP73A6NFT4 308 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 TMEM191CA6NGB0 347 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 FAM47DPA6NHR8 397 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 WEE2P0C1S8 567 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 TMEM191BP0C7N4 346 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 SUPT20HL2P0C7V6 817 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 PYGBP11216 843 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 EZRP15311 586 aaKnown RBP7.92□□□□□ -1.14
LIMA1-213ENST00000552720 KRT15P19012 456 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 MMP8P22894 467 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 SLC8A1P32418 973 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 NRLP54845 237 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 GDF10P55107 478 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 RTP1P59025 263 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 SUPT20HL1Q3ZLR7 823 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 KCNT1Q5JUK3 1230 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 TLDC1Q6P9B6 456 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 SPOCD1Q6ZMY3 1216 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 ASRGL1Q7L266 308 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 WDTC1Q8N5D0 677 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 ALLCQ8N6M5 410 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 DEPTORQ8TB45 409 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 NSUN6Q8TEA1 469 aaKnown RBP7.92□□□□□ -1.14
LIMA1-213ENST00000552720 ZNF668Q96K58 619 aaPredicted RBP7.92□□□□□ -1.14
LIMA1-213ENST00000552720 MTMR12Q9C0I1 747 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 MYLK2Q9H1R3 596 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 TRABDQ9H4I3 376 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 VPS37BQ9H9H4 285 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 PARVAQ9NVD7 372 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 CYP39A1Q9NYL5 469 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 STYXL1Q9Y6J8 313 aa7.92□□□□□ -1.14
LIMA1-213ENST00000552720 A0A0B4J269 797 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 TCRBV5S1A1TA0A578 114 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 LRRD1A4D1F6 860 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 SGK1O00141 431 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 ANP32DO95626 131 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 CDC25CP30307 473 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 SSTR1P30872 391 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 HIRAP54198 1017 aaPredicted RBP7.91□□□□□ -1.14
LIMA1-213ENST00000552720 MYL6P60660 151 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 PLCB3Q01970 1234 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms