RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 PABPC3Q9H361 631 aaKnown RBP15.78■□□□□ 0.12
CUX1-214ENST00000550008 C10orf88Q9H8K7 445 aa15.78■□□□□ 0.12
CUX1-214ENST00000550008 PPARGC1AQ9UBK2 798 aaKnown RBP15.78■□□□□ 0.12
CUX1-214ENST00000550008 H3BRB1 525 aa15.78■□□□□ 0.12
CUX1-214ENST00000550008 CDH16O75309 829 aa15.78■□□□□ 0.12
CUX1-214ENST00000550008 LRRC31Q6UY01 552 aa15.78■□□□□ 0.12
CUX1-214ENST00000550008 PDCD7Q8N8D1 485 aaKnown RBP15.78■□□□□ 0.12
CUX1-214ENST00000550008 HIPK4Q8NE63 616 aa15.78■□□□□ 0.12
CUX1-214ENST00000550008 CDCA5Q96FF9 252 aa15.78■□□□□ 0.12
CUX1-214ENST00000550008 TUT1Q9H6E5 874 aaKnown RBP15.78■□□□□ 0.12
CUX1-214ENST00000550008 LRRC37A3O60309 1634 aa15.77■□□□□ 0.12
CUX1-214ENST00000550008 RARAP10276 462 aa15.77■□□□□ 0.12
CUX1-214ENST00000550008 CLEC16AQ2KHT3 1053 aa15.77■□□□□ 0.12
CUX1-214ENST00000550008 C3orf62Q6ZUJ4 267 aa15.77■□□□□ 0.12
CUX1-214ENST00000550008 PALB2Q86YC2 1186 aa15.77■□□□□ 0.12
CUX1-214ENST00000550008 MCOLN2Q8IZK6 566 aa15.77■□□□□ 0.12
CUX1-214ENST00000550008 APPL2Q8NEU8 664 aa15.77■□□□□ 0.12
CUX1-214ENST00000550008 EXT2Q93063 718 aa15.77■□□□□ 0.12
CUX1-214ENST00000550008 APOL1O14791 398 aa15.77■□□□□ 0.11
CUX1-214ENST00000550008 ASAP2O43150 1006 aa15.77■□□□□ 0.11
CUX1-214ENST00000550008 NCF2P19878 526 aaPredicted RBP15.77■□□□□ 0.11
CUX1-214ENST00000550008 CLK2P49760 499 aaKnown RBP15.77■□□□□ 0.11
CUX1-214ENST00000550008 POTEAQ6S8J7 498 aa15.77■□□□□ 0.11
CUX1-214ENST00000550008 TTC25Q96NG3 672 aa15.77■□□□□ 0.11
CUX1-214ENST00000550008 RAB3IPQ96QF0 476 aaPredicted RBP15.77■□□□□ 0.11
CUX1-214ENST00000550008 SNED1Q8TER0 1413 aa15.77■□□□□ 0.11
CUX1-214ENST00000550008 SCN11AQ9UI33 1791 aa15.77■□□□□ 0.11
CUX1-214ENST00000550008 MUM1Q2TAK8 710 aa15.77■□□□□ 0.11
CUX1-214ENST00000550008 FOXR1Q6PIV2 292 aa15.77■□□□□ 0.11
CUX1-214ENST00000550008 CEP120Q8N960 986 aa15.77■□□□□ 0.11
CUX1-214ENST00000550008 ZSWIM2Q8NEG5 633 aa15.77■□□□□ 0.11
CUX1-214ENST00000550008 USP33Q8TEY7 942 aa15.77■□□□□ 0.11
CUX1-214ENST00000550008 DPP3Q9NY33 737 aa15.77■□□□□ 0.11
CUX1-214ENST00000550008 XPO7Q9UIA9 1087 aaKnown RBP15.77■□□□□ 0.11
CUX1-214ENST00000550008 C5P01031 1676 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 TAP1Q03518 808 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 RPS6KA2Q15349 733 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 DGKDQ16760 1214 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 HGSNATQ68CP4 663 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 ZNF677Q86XU0 584 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 TPX2Q9ULW0 747 aaKnown RBP15.76■□□□□ 0.11
CUX1-214ENST00000550008 A0A1B0GUA9 196 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 AGTP01019 485 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 GLRA2P23416 452 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 MYBPC2Q14324 1141 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 EFHC2Q5JST6 749 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 HYIQ5T013 277 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 NIPA1Q7RTP0 329 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 ABRAQ8N0Z2 381 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 ZNF560Q96MR9 790 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 CCDC68Q9H2F9 335 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 GPRC5DQ9NZD1 345 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 MRPL42Q9Y6G3 142 aaKnown RBP15.76■□□□□ 0.11
CUX1-214ENST00000550008 IGLV3-22A0A075B6J6 115 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 ADCY3O60266 1144 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 LPXNO60711 386 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 HSPA9P38646 679 aaKnown RBP15.76■□□□□ 0.11
CUX1-214ENST00000550008 GCLCP48506 637 aaPredicted RBP15.76■□□□□ 0.11
CUX1-214ENST00000550008 ATP13A4Q4VNC1 1196 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 CATSPERGQ6ZRH7 1159 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 OR5B17Q8NGF7 314 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 RUBCNQ92622 972 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 ZBTB10Q96DT7 871 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 TNIP3Q96KP6 325 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 PFDN4Q9NQP4 134 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 WDR35Q9P2L0 1181 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 MARCOQ9UEW3 520 aaPredicted RBP15.76■□□□□ 0.11
CUX1-214ENST00000550008 CASZ1Q86V15 1759 aa15.76■□□□□ 0.11
CUX1-214ENST00000550008 A0A0A6YYK5 440 aaPredicted RBP15.75■□□□□ 0.11
CUX1-214ENST00000550008 KRT38O76015 456 aa15.75■□□□□ 0.11
CUX1-214ENST00000550008 PROSCO94903 275 aa15.75■□□□□ 0.11
CUX1-214ENST00000550008 SULT1E1P49888 294 aa15.75■□□□□ 0.11
CUX1-214ENST00000550008 ASPHQ12797 758 aa15.75■□□□□ 0.11
CUX1-214ENST00000550008 THOC5Q13769 683 aaKnown RBP15.75■□□□□ 0.11
CUX1-214ENST00000550008 TSNAXIP1Q2TAA8 658 aa15.75■□□□□ 0.11
CUX1-214ENST00000550008 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.75■□□□□ 0.115e-7■■■■■ 64.8
CUX1-214ENST00000550008 CHST7Q9NS84 486 aa15.75■□□□□ 0.11
CUX1-214ENST00000550008 EIF4E1BA6NMX2 242 aaKnown RBP15.75■□□□□ 0.11
CUX1-214ENST00000550008 ESRRAP11474 423 aaPredicted RBP15.75■□□□□ 0.11
CUX1-214ENST00000550008 CETPP11597 493 aa15.75■□□□□ 0.11
CUX1-214ENST00000550008 HNRNPH3P31942 346 aaKnown RBP15.75■□□□□ 0.11
CUX1-214ENST00000550008 TNFSF9P41273 254 aa15.75■□□□□ 0.11
CUX1-214ENST00000550008 PRKCIP41743 596 aa15.75■□□□□ 0.11
CUX1-214ENST00000550008 STAT4Q14765 748 aa15.75■□□□□ 0.11
CUX1-214ENST00000550008 LRIG3Q6UXM1 1119 aa15.75■□□□□ 0.11
CUX1-214ENST00000550008 TRMT10CQ7L0Y3 403 aaKnown RBP15.75■□□□□ 0.11
CUX1-214ENST00000550008 PGBD4Q96DM1 585 aa15.75■□□□□ 0.11
CUX1-214ENST00000550008 PARK7Q99497 189 aaKnown RBP15.75■□□□□ 0.11
CUX1-214ENST00000550008 CDC42EP4Q9H3Q1 356 aaKnown RBP15.75■□□□□ 0.11
CUX1-214ENST00000550008 ETNK1Q9HBU6 452 aa15.75■□□□□ 0.11
CUX1-214ENST00000550008 IL18RAPO95256 599 aa15.75■□□□□ 0.11
CUX1-214ENST00000550008 ADCYAP1R1P41586 468 aa15.75■□□□□ 0.11
CUX1-214ENST00000550008 PTENP60484 403 aa15.75■□□□□ 0.11
CUX1-214ENST00000550008 GTF2BQ00403 316 aa15.75■□□□□ 0.11
CUX1-214ENST00000550008 KLHL38Q2WGJ6 581 aa15.75■□□□□ 0.11
CUX1-214ENST00000550008 RFX8Q6ZV50 586 aa15.75■□□□□ 0.11
CUX1-214ENST00000550008 PRUNE1Q86TP1 453 aa15.75■□□□□ 0.11
CUX1-214ENST00000550008 DNERQ8NFT8 737 aa15.75■□□□□ 0.11
CUX1-214ENST00000550008 MAPK13O15264 365 aa15.75■□□□□ 0.11
CUX1-214ENST00000550008 MEFVO15553 781 aaPredicted RBP15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms