RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	ATP2A2	P16615	1042 aa	Known RBP	13.77	□□□□□ -0.21
CPSF7-223	ENST00000544669	IFNAR2	P48551	515 aa		13.77	□□□□□ -0.21
CPSF7-223	ENST00000544669	VCP	P55072	806 aa	Known RBP	13.77	□□□□□ -0.21
CPSF7-223	ENST00000544669	SOX10	P56693	466 aa		13.77	□□□□□ -0.21
CPSF7-223	ENST00000544669	GSC	P56915	257 aa	Predicted RBP	13.77	□□□□□ -0.21
CPSF7-223	ENST00000544669	SPARCL1	Q14515	664 aa		13.77	□□□□□ -0.21
CPSF7-223	ENST00000544669	MAPK6	Q16659	721 aa		13.77	□□□□□ -0.21
CPSF7-223	ENST00000544669	SPDYA	Q5MJ70	313 aa		13.77	□□□□□ -0.21
CPSF7-223	ENST00000544669	VSTM1	Q6UX27	236 aa		13.77	□□□□□ -0.21
CPSF7-223	ENST00000544669	SPOCD1	Q6ZMY3	1216 aa		13.77	□□□□□ -0.21
CPSF7-223	ENST00000544669	RXFP1	Q9HBX9	757 aa		13.77	□□□□□ -0.21
CPSF7-223	ENST00000544669	APOBEC3G	Q9HC16	384 aa	Known RBP	13.77	□□□□□ -0.21
CPSF7-223	ENST00000544669	NUB1	Q9Y5A7	615 aa		13.77	□□□□□ -0.21
CPSF7-223	ENST00000544669	SSC5D	A1L4H1	1573 aa		13.77	□□□□□ -0.21
CPSF7-223	ENST00000544669	LOC102724159	A0A0B4J2E5	919 aa		13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	RASA4B	C9J798	803 aa		13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	RASA4	O43374	803 aa		13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	TAS2R40	P59535	323 aa		13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	SP4	Q02446	784 aa		13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	SETDB1	Q15047	1291 aa		13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	PWP2	Q15269	919 aa	Known RBP	13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	FBF1	Q8TES7	1133 aa		13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	ALKBH8	Q96BT7	664 aa	Known RBP	13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	ANKRD36BP1	Q96IX9	119 aa		13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	TGS1	Q96RS0	853 aa	Known RBP	13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	SMC6	Q96SB8	1091 aa		13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	NCAPG	Q9BPX3	1015 aa		13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	STARD13	Q9Y3M8	1113 aa		13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	P4HA1	P13674	534 aa		13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	ATP4A	P20648	1035 aa		13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	BAG6	P46379	1132 aa		13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	GMPS	P49915	693 aa	Predicted RBP	13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	ARSE	P51690	589 aa		13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	EN1	Q05925	392 aa	Predicted RBP	13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	MTFR1	Q15390	333 aa		13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	TRIP13	Q15645	432 aa	Predicted RBP	13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	CDCA2	Q69YH5	1023 aa	Predicted RBP	13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	METTL7B	Q6UX53	244 aa		13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	PLPPR4	Q7Z2D5	763 aa		13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	RIOX2	Q8IUF8	465 aa		13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	KLRG1	Q96E93	195 aa		13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	FRMD8	Q9BZ67	464 aa	Predicted RBP	13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	R3HDM2	Q9Y2K5	976 aa	Known RBP	13.76	□□□□□ -0.21
CPSF7-223	ENST00000544669	DOCK1	Q14185	1865 aa		13.75	□□□□□ -0.21
CPSF7-223	ENST00000544669	SIGLEC16	A6NMB1	481 aa		13.75	□□□□□ -0.21
CPSF7-223	ENST00000544669	SPDYE16	A6NNV3	312 aa	Predicted RBP	13.75	□□□□□ -0.21
CPSF7-223	ENST00000544669	B4GALT4	O60513	344 aa		13.75	□□□□□ -0.21
CPSF7-223	ENST00000544669	HNRNPCL1	O60812	293 aa	Known RBP	13.75	□□□□□ -0.21
CPSF7-223	ENST00000544669	DES	P17661	470 aa		13.75	□□□□□ -0.21
CPSF7-223	ENST00000544669	CD58	P19256	250 aa		13.75	□□□□□ -0.21
CPSF7-223	ENST00000544669	RASSF2	P50749	326 aa		13.75	□□□□□ -0.21
CPSF7-223	ENST00000544669	ALDH5A1	P51649	535 aa	Predicted RBP	13.75	□□□□□ -0.21
CPSF7-223	ENST00000544669	LACTB	P83111	547 aa	Predicted RBP	13.75	□□□□□ -0.21
CPSF7-223	ENST00000544669	KLHL38	Q2WGJ6	581 aa		13.75	□□□□□ -0.21
CPSF7-223	ENST00000544669	SPOPL	Q6IQ16	392 aa		13.75	□□□□□ -0.21
CPSF7-223	ENST00000544669	CPNE8	Q86YQ8	564 aa		13.75	□□□□□ -0.21
CPSF7-223	ENST00000544669	PASD1	Q8IV76	773 aa		13.75	□□□□□ -0.21
CPSF7-223	ENST00000544669	RAB3IP	Q96QF0	476 aa	Predicted RBP	13.75	□□□□□ -0.21
CPSF7-223	ENST00000544669	PITPNM3	Q9BZ71	974 aa		13.75	□□□□□ -0.21
CPSF7-223	ENST00000544669	LRRC4C	Q9HCJ2	640 aa		13.75	□□□□□ -0.21
CPSF7-223	ENST00000544669	SAYSD1	Q9NPB0	183 aa		13.75	□□□□□ -0.21
CPSF7-223	ENST00000544669	CISH	Q9NSE2	258 aa		13.75	□□□□□ -0.21
CPSF7-223	ENST00000544669	TXLNG	Q9NUQ3	528 aa		13.75	□□□□□ -0.21
CPSF7-223	ENST00000544669	EURL	Q9NYK6	297 aa		13.75	□□□□□ -0.21
CPSF7-223	ENST00000544669	AGTPBP1	Q9UPW5	1226 aa		13.75	□□□□□ -0.21
CPSF7-223	ENST00000544669	AFG3L2	Q9Y4W6	797 aa		13.75	□□□□□ -0.21
CPSF7-223	ENST00000544669	hCG_1818297	A0A087WSY0	165 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	TCRBV5S1A1T	A0A578	114 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	DCTN3	O75935	186 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	FARP2	O94887	1054 aa	Predicted RBP	13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	ZWINT	O95229	277 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	ATF7	P17544	494 aa	Predicted RBP	13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	EDNRB	P24530	442 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	ATIC	P31939	592 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	ARL4C	P56559	192 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	ELF3	P78545	371 aa	Predicted RBP	13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	PLCB3	Q01970	1234 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	POU5F1B	Q06416	359 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	BNIP1	Q12981	228 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	CAPS	Q13938	189 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	ZNF268	Q14587	947 aa	Predicted RBP	13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	GALNTL6	Q49A17	601 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	PREPL	Q4J6C6	727 aa	Predicted RBP	13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	CCDC38	Q502W7	563 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	PPP1R15B	Q5SWA1	713 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	WLS	Q5T9L3	541 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	LMBRD2	Q68DH5	695 aa	Predicted RBP	13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	PPIL6	Q8IXY8	311 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	SRRM1	Q8IYB3	904 aa	Known RBP	13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	ANKRD42	Q8N9B4	389 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	MAML1	Q92585	1016 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	ACO2	Q99798	780 aa	Known RBP	13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	FGFR1OP2	Q9NVK5	253 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	CPSF3	Q9UKF6	684 aa	Known RBP	13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	ZNF541	Q9H0D2	1346 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	FZD9	O00144	591 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	MSC	O60682	206 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	SPAG6	O75602	509 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	STIP1	P31948	543 aa	Known RBP	13.74	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms