RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 COBLL1Q53SF7 1204 aa5.6□□□□□ -1.51
CLIP1-217ENST00000543205 ZNF618Q5T7W0 954 aa5.6□□□□□ -1.51
CLIP1-217ENST00000543205 ADALQ6DHV7 355 aa5.6□□□□□ -1.51
CLIP1-217ENST00000543205 MFSD5Q6N075 450 aa5.6□□□□□ -1.51
CLIP1-217ENST00000543205 SHC4Q6S5L8 630 aa5.6□□□□□ -1.51
CLIP1-217ENST00000543205 CCDC73Q6ZRK6 1079 aa5.6□□□□□ -1.51
CLIP1-217ENST00000543205 USP49Q70CQ1 688 aa5.6□□□□□ -1.51
CLIP1-217ENST00000543205 LRRC8DQ7L1W4 858 aa5.6□□□□□ -1.51
CLIP1-217ENST00000543205 RPAINQ86UA6 219 aa5.6□□□□□ -1.51
CLIP1-217ENST00000543205 CCNJLQ8IV13 435 aa5.6□□□□□ -1.51
CLIP1-217ENST00000543205 KIAA0319LQ8IZA0 1049 aa5.6□□□□□ -1.51
CLIP1-217ENST00000543205 ATXN2LQ8WWM7 1075 aaKnown RBP5.6□□□□□ -1.51
CLIP1-217ENST00000543205 TTC9Q92623 222 aa5.6□□□□□ -1.51
CLIP1-217ENST00000543205 BADQ92934 168 aa5.6□□□□□ -1.51
CLIP1-217ENST00000543205 WNT8BQ93098 351 aa5.6□□□□□ -1.51
CLIP1-217ENST00000543205 NXPE3Q969Y0 559 aa5.6□□□□□ -1.51
CLIP1-217ENST00000543205 TMEM143Q96AN5 459 aa5.6□□□□□ -1.51
CLIP1-217ENST00000543205 SCLYQ96I15 445 aa5.6□□□□□ -1.51
CLIP1-217ENST00000543205 SCLT1Q96NL6 688 aa5.6□□□□□ -1.51
CLIP1-217ENST00000543205 TCF12Q99081 682 aa5.6□□□□□ -1.51
CLIP1-217ENST00000543205 POP1Q99575 1024 aaKnown RBP5.6□□□□□ -1.51
CLIP1-217ENST00000543205 ELAC2Q9BQ52 826 aaKnown RBP5.6□□□□□ -1.51
CLIP1-217ENST00000543205 HERPUD2Q9BSE4 406 aa5.6□□□□□ -1.51
CLIP1-217ENST00000543205 BHLHE41Q9C0J9 482 aaPredicted RBP5.6□□□□□ -1.51
CLIP1-217ENST00000543205 DHX33Q9H6R0 707 aaKnown RBP5.6□□□□□ -1.51
CLIP1-217ENST00000543205 SUCLA2Q9P2R7 463 aaPredicted RBP5.6□□□□□ -1.51
CLIP1-217ENST00000543205 IGKV6-21A0A0C4DH24 114 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 RFPL1O75677 317 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 VTNP04004 478 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 IQCF3P0C7M6 154 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 CYP11B2P19099 503 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 TNFAIP3P21580 790 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 CMA1P23946 247 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 L1CAMP32004 1257 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 RFC2P35250 354 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 AFF1P51825 1210 aaKnown RBP5.59□□□□□ -1.51
CLIP1-217ENST00000543205 PPIGQ13427 754 aaKnown RBP eCLIP5.59□□□□□ -1.51
CLIP1-217ENST00000543205 CAMK2GQ13555 558 aaPredicted RBP5.59□□□□□ -1.51
CLIP1-217ENST00000543205 GRM3Q14832 879 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 RESP18Q5W5W9 173 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 RINT1Q6NUQ1 792 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 CNNM4Q6P4Q7 775 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 SV2BQ7L1I2 683 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 MAEAQ7L5Y9 396 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 KCNK18Q7Z418 384 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 LRRTM3Q86VH5 581 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 RHPN2Q8IUC4 686 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 LINC01465Q8N7H1 131 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 SYT2Q8N9I0 419 aaPredicted RBP5.59□□□□□ -1.51
CLIP1-217ENST00000543205 IQUBQ8NA54 791 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 GLIS3Q8NEA6 775 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 MCPH1Q8NEM0 835 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 PSPC1Q8WXF1 523 aaKnown RBP5.59□□□□□ -1.51
CLIP1-217ENST00000543205 LARP4BQ92615 738 aaKnown RBP5.59□□□□□ -1.51
CLIP1-217ENST00000543205 RAD54LQ92698 747 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 PPP1R16BQ96T49 567 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 PYM1Q9BRP8 204 aaKnown RBP5.59□□□□□ -1.51
CLIP1-217ENST00000543205 CELF4Q9BZC1 486 aaKnown RBP5.59□□□□□ -1.51
CLIP1-217ENST00000543205 WNT8AQ9H1J5 351 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 KCNH3Q9ULD8 1083 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 GINS2Q9Y248 185 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 TRPV2Q9Y5S1 764 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 CDY2AQ9Y6F7 541 aa5.59□□□□□ -1.51
CLIP1-217ENST00000543205 MYH9P35579 1960 aaKnown RBP5.59□□□□□ -1.51
CLIP1-217ENST00000543205 A0A1W2PQ27 194 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 A0A1W2PQ64 194 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 A0A1W2PQD8 194 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 E2F8A0AVK6 867 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 A6NCN8 305 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 ASAP2O43150 1006 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 CHRNA1P02708 482 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 SRGAP2CP0DJJ0 459 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 CSF2RAP15509 400 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 MAGEA10P43363 369 aaPredicted RBP5.58□□□□□ -1.52
CLIP1-217ENST00000543205 GRIA4P48058 902 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 SLC12A3P55017 1021 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 NLRP11P59045 1033 aaKnown RBP5.58□□□□□ -1.52
CLIP1-217ENST00000543205 ZBED6P86452 979 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 DRP2Q13474 957 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 TFDP1Q14186 410 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 MXD4Q14582 209 aaPredicted RBP5.58□□□□□ -1.52
CLIP1-217ENST00000543205 KIZQ2M2Z5 673 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 TUBB8Q3ZCM7 444 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 SNAP47Q5SQN1 464 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 DEFB128Q7Z7B8 93 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 GPBP1Q86WP2 473 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 FSIP1Q8NA03 581 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 PRPF31Q8WWY3 499 aaKnown RBP5.58□□□□□ -1.52
CLIP1-217ENST00000543205 MRPS27Q92552 414 aaKnown RBP5.58□□□□□ -1.52
CLIP1-217ENST00000543205 DHX58Q96C10 678 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 NLRP4Q96MN2 994 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 TIPINQ9BVW5 301 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 GCOM2Q9BZD3 368 aaPredicted RBP5.58□□□□□ -1.52
CLIP1-217ENST00000543205 POLR3FQ9H1D9 316 aaPredicted RBP5.58□□□□□ -1.52
CLIP1-217ENST00000543205 ABCB6Q9NP58 842 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 XPNPEP1Q9NQW7 623 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 BLOC1S4Q9NUP1 217 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 KCND2Q9NZV8 630 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 MYH15Q9Y2K3 1946 aa5.58□□□□□ -1.52
CLIP1-217ENST00000543205 BRCA2P51587 3418 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms