RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 CAMK4Q16566 473 aa16.16■□□□□ 0.18
CPSF1-208ENST00000532560 ISM2Q6H9L7 571 aa16.16■□□□□ 0.18
CPSF1-208ENST00000532560 FOXR2Q6PJQ5 311 aa16.16■□□□□ 0.18
CPSF1-208ENST00000532560 LIMS2Q7Z4I7 341 aa16.16■□□□□ 0.18
CPSF1-208ENST00000532560 THEM5Q8N1Q8 247 aa16.16■□□□□ 0.18
CPSF1-208ENST00000532560 OR10T2Q8NGX3 314 aa16.16■□□□□ 0.18
CPSF1-208ENST00000532560 RTP3Q9BQQ7 232 aa16.16■□□□□ 0.18
CPSF1-208ENST00000532560 CLSTN2Q9H4D0 955 aa16.16■□□□□ 0.18
CPSF1-208ENST00000532560 WDR6Q9NNW5 1121 aaKnown RBP16.16■□□□□ 0.18
CPSF1-208ENST00000532560 KIAA1468Q9P260 1216 aa16.16■□□□□ 0.18
CPSF1-208ENST00000532560 USTQ9Y2C2 406 aa16.16■□□□□ 0.18
CPSF1-208ENST00000532560 NR2E1Q9Y466 385 aa16.16■□□□□ 0.18
CPSF1-208ENST00000532560 CLUHO75153 1309 aa16.16■□□□□ 0.18
CPSF1-208ENST00000532560 GOLGA6L22H0YM25 854 aa16.15■□□□□ 0.18
CPSF1-208ENST00000532560 BIN1O00499 593 aa16.15■□□□□ 0.18
CPSF1-208ENST00000532560 PRRG1O14668 218 aa16.15■□□□□ 0.18
CPSF1-208ENST00000532560 SLC16A3O15427 465 aaKnown RBP16.15■□□□□ 0.18
CPSF1-208ENST00000532560 C4BPAP04003 597 aaKnown RBP16.15■□□□□ 0.18
CPSF1-208ENST00000532560 OR4Q2P0C623 313 aa16.15■□□□□ 0.18
CPSF1-208ENST00000532560 EPB41P11171 864 aaKnown RBP16.15■□□□□ 0.18
CPSF1-208ENST00000532560 KRT13P13646 458 aa16.15■□□□□ 0.18
CPSF1-208ENST00000532560 CD44P16070 742 aaKnown RBP16.15■□□□□ 0.18
CPSF1-208ENST00000532560 ATICP31939 592 aa16.15■□□□□ 0.18
CPSF1-208ENST00000532560 FKBP3Q00688 224 aaKnown RBP16.15■□□□□ 0.18
CPSF1-208ENST00000532560 ADCY1Q08828 1119 aa16.15■□□□□ 0.18
CPSF1-208ENST00000532560 BIRC3Q13489 604 aa16.15■□□□□ 0.18
CPSF1-208ENST00000532560 TRPC3Q13507 836 aa16.15■□□□□ 0.18
CPSF1-208ENST00000532560 ZACNQ401N2 412 aa16.15■□□□□ 0.18
CPSF1-208ENST00000532560 C1orf220Q5T0J3 134 aa16.15■□□□□ 0.18
CPSF1-208ENST00000532560 ANKRD40Q6AI12 368 aa16.15■□□□□ 0.18
CPSF1-208ENST00000532560 RNF19BQ6ZMZ0 732 aa16.15■□□□□ 0.18
CPSF1-208ENST00000532560 DPH6Q7L8W6 267 aa16.15■□□□□ 0.18
CPSF1-208ENST00000532560 ADGRF2Q8IZF7 708 aa16.15■□□□□ 0.18
CPSF1-208ENST00000532560 SYAP1Q96A49 352 aaPredicted RBP16.15■□□□□ 0.18
CPSF1-208ENST00000532560 RPGRIP1Q96KN7 1286 aa16.15■□□□□ 0.18
CPSF1-208ENST00000532560 ZCWPW1Q9H0M4 648 aa16.15■□□□□ 0.18
CPSF1-208ENST00000532560 XYLT2Q9H1B5 865 aa16.15■□□□□ 0.18
CPSF1-208ENST00000532560 VRTNQ9H8Y1 702 aa16.15■□□□□ 0.18
CPSF1-208ENST00000532560 PIDD1Q9HB75 910 aa16.15■□□□□ 0.18
CPSF1-208ENST00000532560 CYP4F11Q9HBI6 524 aa16.15■□□□□ 0.18
CPSF1-208ENST00000532560 INSL5Q9Y5Q6 135 aa16.15■□□□□ 0.18
CPSF1-208ENST00000532560 C5orf42Q9H799 3197 aa16.14■□□□□ 0.17
CPSF1-208ENST00000532560 MTMR11A4FU01 709 aa16.14■□□□□ 0.17
CPSF1-208ENST00000532560 TRIM49BA6NDI0 452 aa16.14■□□□□ 0.17
CPSF1-208ENST00000532560 PPP1R3GB7ZBB8 358 aa16.14■□□□□ 0.17
CPSF1-208ENST00000532560 CCL16O15467 120 aa16.14■□□□□ 0.17
CPSF1-208ENST00000532560 PHACTR2O75167 634 aa16.14■□□□□ 0.17
CPSF1-208ENST00000532560 SEC24AO95486 1093 aa16.14■□□□□ 0.17
CPSF1-208ENST00000532560 VNN2O95498 520 aa16.14■□□□□ 0.17
CPSF1-208ENST00000532560 CST3P01034 146 aaPredicted RBP16.14■□□□□ 0.17
CPSF1-208ENST00000532560 SMARCB1Q12824 385 aa16.14■□□□□ 0.17
CPSF1-208ENST00000532560 NCOA4Q13772 614 aa16.14■□□□□ 0.17
CPSF1-208ENST00000532560 SOWAHAQ2M3V2 549 aa16.14■□□□□ 0.17
CPSF1-208ENST00000532560 TDRD5Q8NAT2 981 aaKnown RBP16.14■□□□□ 0.17
CPSF1-208ENST00000532560 TMEM209Q96SK2 561 aa16.14■□□□□ 0.17
CPSF1-208ENST00000532560 HSFX1Q9UBD0 423 aa16.14■□□□□ 0.17
CPSF1-208ENST00000532560 BICDL2A1A5D9 508 aa16.13■□□□□ 0.17
CPSF1-208ENST00000532560 C2CD4DB7Z1M9 353 aa16.13■□□□□ 0.17
CPSF1-208ENST00000532560 GABRDO14764 452 aa16.13■□□□□ 0.17
CPSF1-208ENST00000532560 VNN1O95497 513 aa16.13■□□□□ 0.17
CPSF1-208ENST00000532560 LRG1P02750 347 aa16.13■□□□□ 0.17
CPSF1-208ENST00000532560 TRIM49P0CI25 452 aa16.13■□□□□ 0.17
CPSF1-208ENST00000532560 TRIM49CP0CI26 452 aa16.13■□□□□ 0.17
CPSF1-208ENST00000532560 LHX1P48742 406 aa16.13■□□□□ 0.17
CPSF1-208ENST00000532560 MYL6P60660 151 aa16.13■□□□□ 0.17
CPSF1-208ENST00000532560 MYL7Q01449 175 aa16.13■□□□□ 0.17
CPSF1-208ENST00000532560 TSPY1Q01534 308 aa16.13■□□□□ 0.17
CPSF1-208ENST00000532560 ZNF699Q32M78 642 aa16.13■□□□□ 0.17
CPSF1-208ENST00000532560 SLC39A12Q504Y0 691 aa16.13■□□□□ 0.17
CPSF1-208ENST00000532560 KLHL10Q6JEL2 608 aa16.13■□□□□ 0.17
CPSF1-208ENST00000532560 TTI2Q6NXR4 508 aa16.13■□□□□ 0.17
CPSF1-208ENST00000532560 SV2AQ7L0J3 742 aa16.13■□□□□ 0.17
CPSF1-208ENST00000532560 OTOP3Q7RTS5 596 aa16.13■□□□□ 0.17
CPSF1-208ENST00000532560 OSTM1Q86WC4 334 aa16.13■□□□□ 0.17
CPSF1-208ENST00000532560 DCP1BQ8IZD4 617 aaKnown RBP16.13■□□□□ 0.17
CPSF1-208ENST00000532560 C2orf15Q8WU43 125 aaKnown RBP16.13■□□□□ 0.17
CPSF1-208ENST00000532560 KBTBD7Q8WVZ9 684 aa16.13■□□□□ 0.17
CPSF1-208ENST00000532560 NELFBQ8WX92 580 aa16.13■□□□□ 0.17
CPSF1-208ENST00000532560 EEF2KMTQ96G04 330 aa16.13■□□□□ 0.17
CPSF1-208ENST00000532560 ACBD6Q9BR61 282 aa16.13■□□□□ 0.17
CPSF1-208ENST00000532560 NUP62CLQ9H1M0 184 aa16.13■□□□□ 0.17
CPSF1-208ENST00000532560 DDX43Q9NXZ2 648 aaKnown RBP16.13■□□□□ 0.17
CPSF1-208ENST00000532560 CTNND2Q9UQB3 1225 aa16.13■□□□□ 0.17
CPSF1-208ENST00000532560 YIPF1Q9Y548 306 aa16.13■□□□□ 0.17
CPSF1-208ENST00000532560 TACC1O75410 805 aa16.12■□□□□ 0.17
CPSF1-208ENST00000532560 FAM163BP0C2L3 166 aa16.12■□□□□ 0.17
CPSF1-208ENST00000532560 WARSP23381 471 aaKnown RBP16.12■□□□□ 0.17
CPSF1-208ENST00000532560 SP100P23497 879 aaPredicted RBP16.12■□□□□ 0.17
CPSF1-208ENST00000532560 PCSK1P29120 753 aa16.12■□□□□ 0.17
CPSF1-208ENST00000532560 GTF2H1P32780 548 aa16.12■□□□□ 0.17
CPSF1-208ENST00000532560 TNNC1P63316 161 aa16.12■□□□□ 0.17
CPSF1-208ENST00000532560 PAK1Q13153 545 aa16.12■□□□□ 0.17
CPSF1-208ENST00000532560 PLD1Q13393 1074 aa16.12■□□□□ 0.17
CPSF1-208ENST00000532560 WDR72Q3MJ13 1102 aa16.12■□□□□ 0.17
CPSF1-208ENST00000532560 TAF4BQ92750 862 aa16.12■□□□□ 0.17
CPSF1-208ENST00000532560 CEP63Q96MT8 703 aa16.12■□□□□ 0.17
CPSF1-208ENST00000532560 PGLYRP2Q96PD5 576 aa16.12■□□□□ 0.17
CPSF1-208ENST00000532560 CRISPLD1Q9H336 500 aa16.12■□□□□ 0.17
CPSF1-208ENST00000532560 POLIQ9UNA4 740 aa16.12■□□□□ 0.17
CPSF1-208ENST00000532560 STX10O60499 249 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms