RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 TTC25Q96NG3 672 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 TSSK1BQ9BXA7 367 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 KLHL25Q9H0H3 589 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 GIN1Q9NXP7 522 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 LGALS13Q9UHV8 139 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 SCINQ9Y6U3 715 aa12.66□□□□□ -0.38
LIMCH1-213ENST00000511496 FAM237BA0A1B0GVD1 139 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 ANKRD62A6NC57 917 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 PEX1O43933 1283 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 FBXO21O94952 628 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 KRT75O95678 551 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 NR4A1P22736 598 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 BPHLQ86WA6 291 aaPredicted RBP12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 SEPT12Q8IYM1 358 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 UBL4BQ8N7F7 174 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 RFFLQ8WZ73 363 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 Q9H521 79 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 SSX2IPQ9Y2D8 614 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 EMSYQ7Z589 1322 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 KRT4P19013 534 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 NUP107P57740 925 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 MRPS9P82933 396 aaKnown RBP12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 SLC25A3Q00325 362 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 FUT2Q10981 343 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 HIC1Q14526 733 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 MESDQ14696 234 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 STAT4Q14765 748 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 GPR162Q16538 588 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 EFHC1Q5JVL4 640 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 SPOPLQ6IQ16 392 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 BLIDQ8IZY5 108 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 GPAMQ9HCL2 828 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 MAN1C1Q9NR34 630 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 ARHGEF4Q9NR80 690 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 ZNHIT2Q9UHR6 403 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 MTO1Q9Y2Z2 717 aaKnown RBP12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 PCDHGA3Q9Y5H0 932 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 ACTL7BQ9Y614 415 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 SYNGAP1Q96PV0 1343 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 MYH3P11055 1940 aa12.65□□□□□ -0.38
LIMCH1-213ENST00000511496 DCAF8L1A6NGE4 600 aa12.65□□□□□ -0.39
LIMCH1-213ENST00000511496 AP1G1O43747 822 aa12.65□□□□□ -0.39
LIMCH1-213ENST00000511496 DNAJA2O60884 412 aa12.65□□□□□ -0.39
LIMCH1-213ENST00000511496 ENO2P09104 434 aaPredicted RBP12.65□□□□□ -0.39
LIMCH1-213ENST00000511496 WASHC5Q12768 1159 aa12.65□□□□□ -0.39
LIMCH1-213ENST00000511496 DCAF17Q5H9S7 520 aaPredicted RBP12.65□□□□□ -0.39
LIMCH1-213ENST00000511496 CCSAPQ6IQ19 270 aaPredicted RBP12.65□□□□□ -0.39
LIMCH1-213ENST00000511496 NANOGP8Q6NSW7 305 aa12.65□□□□□ -0.39
LIMCH1-213ENST00000511496 SRBD1Q8N5C6 995 aaKnown RBP12.65□□□□□ -0.39
LIMCH1-213ENST00000511496 ZNF398Q8TD17 642 aa12.65□□□□□ -0.39
LIMCH1-213ENST00000511496 MANSC1Q9H8J5 431 aa12.65□□□□□ -0.39
LIMCH1-213ENST00000511496 CYP4F11Q9HBI6 524 aa12.65□□□□□ -0.39
LIMCH1-213ENST00000511496 XAB2Q9HCS7 855 aaKnown RBP12.65□□□□□ -0.39
LIMCH1-213ENST00000511496 POU2F3Q9UKI9 436 aa12.65□□□□□ -0.39
LIMCH1-213ENST00000511496 AP4B1Q9Y6B7 739 aa12.65□□□□□ -0.39
LIMCH1-213ENST00000511496 A0A0A6YYK5 440 aaPredicted RBP12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 TMX2-CTNND1H3BSU7 103 aa12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 CHEK2O96017 543 aa12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 POLR2MP0CAP2 368 aa12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 ZNF568Q3ZCX4 644 aa12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 PCNX4Q63HM2 1172 aa12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 ATG4AQ8WYN0 398 aa12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 CALML4Q96GE6 196 aa12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 THAP2Q9H0W7 228 aa12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 MRPL46Q9H2W6 279 aaKnown RBP12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 GPRC5DQ9NZD1 345 aa12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 MTMR7Q9Y216 660 aa12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 TNFRSF10AO00220 468 aa12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 SPOPO43791 374 aa12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 FAM58BPP0C7Q3 252 aa12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 PLS3P13797 630 aa12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 SHROOM1Q2M3G4 852 aaPredicted RBP12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 WDR45BQ5MNZ6 344 aa12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 C6orf52Q5T4I8 152 aa12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 PRPF39Q86UA1 669 aaKnown RBP12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 MAGEB6Q8N7X4 407 aa12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 ATP2A3Q93084 1043 aa12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 DCUN1D1Q96GG9 259 aa12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 SNX25Q9H3E2 840 aa12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 ZHX3Q9H4I2 956 aa12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 ACP6Q9NPH0 428 aa12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 DDX56Q9NY93 547 aaKnown RBP12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 SMG5Q9UPR3 1016 aaKnown RBP12.64□□□□□ -0.39
LIMCH1-213ENST00000511496 PFDN6O15212 129 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 ZNF12P17014 697 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 CTNNA2P26232 953 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 ALDH18A1P54886 795 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 NPEPPSP55786 919 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 ITGADQ13349 1161 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 PHKG1Q16816 387 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 AKAP4Q5JQC9 854 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 MARVELD2Q8N4S9 558 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 PDZD8Q8NEN9 1154 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 SLC39A3Q9BRY0 314 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 SHCBP1LQ9BZQ2 653 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 RIC8AQ9NPQ8 531 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 TP73O15350 636 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 CRTAMO95727 393 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 KITP10721 976 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 HSPA6P17066 643 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms