RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 TFDP3Q5H9I0 405 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 MDM1Q8TC05 714 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 SPATA18Q8TC71 538 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 MED15Q96RN5 788 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 MTMR12Q9C0I1 747 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 FAM153AQ9UHL3 310 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 ZSCAN5CA6NGD5 496 aaPredicted RBP11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 WNT10BO00744 389 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 CAND2O75155 1236 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 FECHP22830 423 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 GCKP35557 465 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 GEMIN4P57678 1058 aaKnown RBP11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 C1QBPQ07021 282 aaKnown RBP11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 SPOUT1Q5T280 376 aaKnown RBP11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 CPSF2Q9P2I0 782 aaKnown RBP11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 CASQ2O14958 399 aaPredicted RBP11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 CCDC22O60826 627 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 ACADSBP45954 432 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 SULT1E1P49888 294 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 ABRAQ8N0Z2 381 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 ATG4AQ8WYN0 398 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 HDAC11Q96DB2 347 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 HPDLQ96IR7 371 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 VCPIP1Q96JH7 1222 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 LRGUKQ96M69 825 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 UBN1Q9NPG3 1134 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 SERPINB9P50453 376 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 SKOR1P84550 965 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 TSPY1Q01534 308 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 NME3Q13232 169 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 MKRN4PQ13434 485 aaPredicted RBP11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 FBXW10Q5XX13 1052 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 PARD3BQ8TEW8 1205 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 HSD17B14Q9BPX1 270 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 AVENQ9NQS1 362 aaPredicted RBP11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 RAB6BQ9NRW1 208 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 BFARQ9NZS9 450 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 ZC3H7BQ9UGR2 993 aaKnown RBP11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 VAV3Q9UKW4 847 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 CCDC195A0A1B0GUA6 201 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 SYF2O95926 243 aaKnown RBP11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 RGS7P49802 495 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 GTF2BQ00403 316 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 NFIL3Q16649 462 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 DCAF4L1Q3SXM0 396 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 CD302Q8IX05 232 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 MREGQ8N565 214 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 CDC42EP4Q9H3Q1 356 aaKnown RBP11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 PIK3R2O00459 728 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 ITGB3P05106 788 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 TAC1P20366 129 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 SLC26A2P50443 739 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 SMTNL2Q2TAL5 461 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 ARSHQ5FYA8 562 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 ZNF484Q5JVG2 852 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 C3orf62Q6ZUJ4 267 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 ANKRD13AQ8IZ07 590 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 C4orf33Q8N1A6 199 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 TATDN2Q93075 761 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 SLC13A1Q9BZW2 595 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 VPS11Q9H270 941 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 STOML1Q9UBI4 398 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 CPSF3Q9UKF6 684 aaKnown RBP11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 PIN4Q9Y237 131 aaKnown RBP11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 FRMD3A2A2Y4 597 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 GOLGA7BQ2TAP0 167 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 WWP1Q9H0M0 922 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 AFG3L2Q9Y4W6 797 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 UBIAD1Q9Y5Z9 338 aa11.3□□□□□ -0.6
LIMCH1-205ENST00000503057 IGKV6D-41A0A0C4DH26 115 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 AP3B1O00203 1094 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 ZNF844Q08AG5 666 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 PTK7Q13308 1070 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 MORF4L2Q15014 288 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 NBPF12Q5TAG4 269 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 TSSK1BQ9BXA7 367 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 SCOCQ9UIL1 159 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 KIAA1257Q9ULG3 409 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 APRTP07741 180 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 STIP1P31948 543 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 CLK2P49760 499 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 NOP9Q86U38 636 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 AGGF1Q8N302 714 aaeCLIP11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 PLCD3Q8N3E9 789 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 LNX1Q8TBB1 728 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 FSD1LQ9BXM9 530 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 TRIM33Q9UPN9 1127 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 S100BP04271 92 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 KITP10721 976 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 RBP3P10745 1247 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 CTCFP49711 727 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 SEZ6Q53EL9 994 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 TTC39BQ5VTQ0 682 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 METTL7BQ6UX53 244 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 LRRC34Q8IZ02 419 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 TSEN2Q8NCE0 465 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 GSDMBQ8TAX9 411 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 VPS39Q96JC1 886 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 TTYH3Q9C0H2 523 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 RIPK2O43353 540 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms