RNA–Protein interactions for RNA: ENST00000498658.5

FXR1-222, Transcript of FMR1 autosomal homolog 1, human

TSL 2

Gene FXR1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Exosome, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FXR1-222	ENST00000498658	ZNF197	O14709	1029 aa		11.31	□□□□□ -0.6
FXR1-222	ENST00000498658	MAPK13	O15264	365 aa		11.31	□□□□□ -0.6
FXR1-222	ENST00000498658	NR3C1	P04150	777 aa		11.31	□□□□□ -0.6
FXR1-222	ENST00000498658	PTPN2	P17706	415 aa		11.31	□□□□□ -0.6
FXR1-222	ENST00000498658	SP100	P23497	879 aa	Predicted RBP	11.31	□□□□□ -0.6
FXR1-222	ENST00000498658	LHX1	P48742	406 aa		11.31	□□□□□ -0.6
FXR1-222	ENST00000498658	TUFM	P49411	452 aa	Known RBP	11.31	□□□□□ -0.6
FXR1-222	ENST00000498658	WNT7B	P56706	349 aa		11.31	□□□□□ -0.6
FXR1-222	ENST00000498658	ZXDA	P98168	799 aa		11.31	□□□□□ -0.6
FXR1-222	ENST00000498658	MYL7	Q01449	175 aa		11.31	□□□□□ -0.6
FXR1-222	ENST00000498658	TSPY1	Q01534	308 aa		11.31	□□□□□ -0.6
FXR1-222	ENST00000498658	BFSP1	Q12934	665 aa		11.31	□□□□□ -0.6
FXR1-222	ENST00000498658	NFIL3	Q16649	462 aa		11.31	□□□□□ -0.6
FXR1-222	ENST00000498658	PABPC1L	Q4VXU2	614 aa	Known RBP	11.31	□□□□□ -0.6
FXR1-222	ENST00000498658	TRAPPC11	Q7Z392	1133 aa		11.31	□□□□□ -0.6
FXR1-222	ENST00000498658	DCP1B	Q8IZD4	617 aa	Known RBP	11.31	□□□□□ -0.6
FXR1-222	ENST00000498658	TOP6BL	Q8N6T0	577 aa		11.31	□□□□□ -0.6
FXR1-222	ENST00000498658	KHSRP	Q92945	711 aa	Known RBP eCLIP	11.31	□□□□□ -0.6	6e-7	■■□□□ 14
FXR1-222	ENST00000498658	SMARCE1	Q969G3	411 aa		11.31	□□□□□ -0.6
FXR1-222	ENST00000498658	BORCS6	Q96GS4	357 aa		11.31	□□□□□ -0.6
FXR1-222	ENST00000498658	HPDL	Q96IR7	371 aa		11.31	□□□□□ -0.6
FXR1-222	ENST00000498658	ZNF512	Q96ME7	567 aa	Predicted RBP	11.31	□□□□□ -0.6
FXR1-222	ENST00000498658	AVEN	Q9NQS1	362 aa	Predicted RBP	11.31	□□□□□ -0.6
FXR1-222	ENST00000498658	DMAC2	Q9NW81	257 aa		11.31	□□□□□ -0.6
FXR1-222	ENST00000498658	INSL5	Q9Y5Q6	135 aa		11.31	□□□□□ -0.6
FXR1-222	ENST00000498658	STK25	O00506	426 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	MICAL2	O94851	1124 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	FAM163B	P0C2L3	166 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	LAMP2	P13473	410 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	PCSK1	P29120	753 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	ATIC	P31939	592 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	PPP1R2	P41236	205 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	ALDH1A3	P47895	512 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	EPHB3	P54753	998 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	CLDN10	P78369	228 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	ENPEP	Q07075	957 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	TRPC3	Q13507	836 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	STIM1	Q13586	685 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	NFE2	Q16621	373 aa	Predicted RBP	11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	COBLL1	Q53SF7	1204 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	CYP4A22	Q5TCH4	519 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	ZNF658	Q5TYW1	1059 aa	Predicted RBP	11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	WSCD1	Q658N2	575 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	RNF19B	Q6ZMZ0	732 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	GET4	Q7L5D6	327 aa	Predicted RBP	11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	OR5B17	Q8NGF7	314 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	CXorf38	Q8TB03	319 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	SYAP1	Q96A49	352 aa	Predicted RBP	11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	ACBD6	Q9BR61	282 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	ZCWPW1	Q9H0M4	648 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	LIMD1	Q9UGP4	676 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	SIX4	Q9UIU6	781 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	CDH7	Q9ULB5	785 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	MRPS23	Q9Y3D9	190 aa	Known RBP	11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	ASB3	Q9Y575	518 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	SNX9	Q9Y5X1	595 aa		11.3	□□□□□ -0.6
FXR1-222	ENST00000498658	IKBKB	O14920	756 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	PHACTR2	O75167	634 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	SEC24A	O95486	1093 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	FGF19	O95750	216 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	STAU1	O95793	577 aa	Known RBP	11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	KRT13	P13646	458 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	NR2F2	P24468	414 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	UBE2H	P62256	183 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	TNNC1	P63316	161 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	SIGLEC14	Q08ET2	396 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	TWF1	Q12792	350 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	DUSP4	Q13115	394 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	PNOC	Q13519	176 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	TDG	Q13569	410 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	EDRF1	Q3B7T1	1238 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	CEP135	Q66GS9	1140 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	LMBRD2	Q68DH5	695 aa	Predicted RBP	11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	CENPP	Q6IPU0	288 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	TRIM67	Q6ZTA4	783 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	INTS8	Q75QN2	995 aa	Known RBP	11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	MTSS1L	Q765P7	747 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	PDZD4	Q76G19	769 aa	Predicted RBP	11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	ITIH5	Q86UX2	942 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	TMEM130	Q8N3G9	435 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	PDCL2	Q8N4E4	241 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	OR10T2	Q8NGX3	314 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	SPATA20	Q8TB22	786 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	SPPL2B	Q8TCT7	592 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	TMC2	Q8TDI7	906 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	PARD3B	Q8TEW8	1205 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	PGLYRP2	Q96PD5	576 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	KCNK12	Q9HB15	430 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	GDE1	Q9NZC3	331 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	DNMT3B	Q9UBC3	853 aa	Known RBP	11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	MAPK8IP1	Q9UQF2	711 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	PTPRJ	Q12913	1337 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	TRIO	O75962	3097 aa		11.29	□□□□□ -0.6
FXR1-222	ENST00000498658	MTMR11	A4FU01	709 aa		11.28	□□□□□ -0.6
FXR1-222	ENST00000498658	RHO	P08100	348 aa		11.28	□□□□□ -0.6
FXR1-222	ENST00000498658	OR4Q2	P0C623	313 aa		11.28	□□□□□ -0.6
FXR1-222	ENST00000498658	PSMC2	P35998	433 aa	Known RBP	11.28	□□□□□ -0.6
FXR1-222	ENST00000498658	ADAM9	Q13443	819 aa		11.28	□□□□□ -0.6
FXR1-222	ENST00000498658	BIRC3	Q13489	604 aa		11.28	□□□□□ -0.6
FXR1-222	ENST00000498658	VEPH1	Q14D04	833 aa		11.28	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms