RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 KRTAP1-1Q07627 177 aa4.8□□□□□ -1.64
USP54-217ENST00000498213 SPP2Q13103 211 aa4.8□□□□□ -1.64
USP54-217ENST00000498213 CNGB1Q14028 1251 aaPredicted RBP4.8□□□□□ -1.64
USP54-217ENST00000498213 UBE4AQ14139 1066 aa4.8□□□□□ -1.64
USP54-217ENST00000498213 GCKRQ14397 625 aa4.8□□□□□ -1.64
USP54-217ENST00000498213 CLUL1Q15846 466 aa4.8□□□□□ -1.64
USP54-217ENST00000498213 ARHGAP44Q17R89 818 aa4.8□□□□□ -1.64
USP54-217ENST00000498213 FNDC3BQ53EP0 1204 aaKnown RBP4.8□□□□□ -1.64
USP54-217ENST00000498213 ZCCHC8Q6NZY4 707 aaKnown RBP4.8□□□□□ -1.64
USP54-217ENST00000498213 ANKRD33Q7Z3H0 272 aa4.8□□□□□ -1.64
USP54-217ENST00000498213 PALM2Q8IXS6 379 aa4.8□□□□□ -1.64
USP54-217ENST00000498213 E2F7Q96AV8 911 aa4.8□□□□□ -1.64
USP54-217ENST00000498213 NEIL1Q96FI4 390 aaPredicted RBP4.8□□□□□ -1.64
USP54-217ENST00000498213 GNRHR2Q96P88 292 aa4.8□□□□□ -1.64
USP54-217ENST00000498213 SORCS2Q96PQ0 1159 aa4.8□□□□□ -1.64
USP54-217ENST00000498213 MYD88Q99836 296 aa4.8□□□□□ -1.64
USP54-217ENST00000498213 SSBP3Q9BWW4 388 aaPredicted RBP4.8□□□□□ -1.64
USP54-217ENST00000498213 KLC2Q9H0B6 622 aa4.8□□□□□ -1.64
USP54-217ENST00000498213 DLL3Q9NYJ7 618 aa4.8□□□□□ -1.64
USP54-217ENST00000498213 CDC42EP3Q9UKI2 254 aa4.8□□□□□ -1.64
USP54-217ENST00000498213 B3GALT1Q9Y5Z6 326 aa4.8□□□□□ -1.64
USP54-217ENST00000498213 RLFQ13129 1914 aa4.8□□□□□ -1.64
USP54-217ENST00000498213 UMODL1Q5DID0 1318 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 MROH5Q6ZUA9 1318 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 A0A0G2JNJ9 132 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 PI4KAP2A4QPH2 592 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 MUSKO15146 869 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 CDC14BO60729 498 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 ZNF623O75123 536 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 ALDH1L1O75891 902 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 SDHAP31040 664 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 CCL23P55773 120 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 IRX3P78415 501 aaPredicted RBP4.79□□□□□ -1.64
USP54-217ENST00000498213 CD83Q01151 205 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 CHRNDQ07001 517 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 DMWDQ09019 674 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 PABPC4Q13310 644 aaKnown RBP eCLIP4.79□□□□□ -1.64
USP54-217ENST00000498213 IFIT5Q13325 482 aaKnown RBP4.79□□□□□ -1.64
USP54-217ENST00000498213 SEC23AQ15436 765 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 ZNF174Q15697 407 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 CCDC144BQ3MJ40 725 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 GRAMD4Q6IC98 578 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 APOBEC3HQ6NTF7 200 aaKnown RBP4.79□□□□□ -1.64
USP54-217ENST00000498213 ABHD17CQ6PCB6 329 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 LRSAM1Q6UWE0 723 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 UBE2R2Q712K3 238 aaPredicted RBP4.79□□□□□ -1.64
USP54-217ENST00000498213 TAX1BP1Q86VP1 789 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 WDR63Q8IWG1 891 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 ZFPM1Q8IX07 1006 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 DCLK2Q8N568 766 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 PI4KAP1Q8N8J0 262 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 CHST14Q8NCH0 376 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 NEK9Q8TD19 979 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 SH3RF3Q8TEJ3 882 aaPredicted RBP4.79□□□□□ -1.64
USP54-217ENST00000498213 FAM151AQ8WW52 585 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 ZDHHC5Q9C0B5 715 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 KIAA1683Q9H0B3 1180 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 STARD7Q9NQZ5 370 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 Q9UFV3 132 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 PUF60Q9UHX1 559 aaKnown RBP4.79□□□□□ -1.64
USP54-217ENST00000498213 OAZ3Q9UMX2 235 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 MAP3K2Q9Y2U5 619 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 AK9Q5TCS8 1911 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 DLG5Q8TDM6 1919 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 VPS13AQ96RL7 3174 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 PLXNB2O15031 1838 aa4.79□□□□□ -1.64
USP54-217ENST00000498213 RFX7Q2KHR2 1363 aa4.78□□□□□ -1.64
USP54-217ENST00000498213 SEPT4O43236 478 aa4.78□□□□□ -1.64
USP54-217ENST00000498213 PLIN1O60240 522 aa4.78□□□□□ -1.64
USP54-217ENST00000498213 ASMTLO95671 621 aa4.78□□□□□ -1.64
USP54-217ENST00000498213 IGKV5-2P06315 115 aa4.78□□□□□ -1.64
USP54-217ENST00000498213 C6P13671 934 aa4.78□□□□□ -1.64
USP54-217ENST00000498213 CR2P20023 1033 aa4.78□□□□□ -1.64
USP54-217ENST00000498213 APEX1P27695 318 aaKnown RBP4.78□□□□□ -1.64
USP54-217ENST00000498213 KIF11P52732 1056 aa4.78□□□□□ -1.64
USP54-217ENST00000498213 HMGA2P52926 109 aa4.78□□□□□ -1.64
USP54-217ENST00000498213 CHAF1AQ13111 956 aaPredicted RBP4.78□□□□□ -1.64
USP54-217ENST00000498213 STILQ15468 1287 aa4.78□□□□□ -1.64
USP54-217ENST00000498213 CCDC57Q2TAC2 916 aa4.78□□□□□ -1.64
USP54-217ENST00000498213 TM4SF20Q53R12 229 aa4.78□□□□□ -1.64
USP54-217ENST00000498213 CAVIN4Q5BKX8 364 aa4.78□□□□□ -1.64
USP54-217ENST00000498213 PIK3R6Q5UE93 754 aa4.78□□□□□ -1.64
USP54-217ENST00000498213 FSTL4Q6MZW2 842 aa4.78□□□□□ -1.64
USP54-217ENST00000498213 TMED8Q6PL24 325 aaPredicted RBP4.78□□□□□ -1.64
USP54-217ENST00000498213 FILIP1Q7Z7B0 1213 aa4.78□□□□□ -1.64
USP54-217ENST00000498213 DNAAF4Q8WXU2 420 aa4.78□□□□□ -1.64
USP54-217ENST00000498213 DLG3Q92796 817 aa4.78□□□□□ -1.64
USP54-217ENST00000498213 TEKT1Q969V4 418 aa4.78□□□□□ -1.64
USP54-217ENST00000498213 AMNQ9BXJ7 453 aa4.78□□□□□ -1.64
USP54-217ENST00000498213 SCAND2PQ9GZW5 306 aaPredicted RBP4.78□□□□□ -1.64
USP54-217ENST00000498213 SEMA4AQ9H3S1 761 aa4.78□□□□□ -1.64
USP54-217ENST00000498213 XPNPEP3Q9NQH7 507 aa4.78□□□□□ -1.64
USP54-217ENST00000498213 ZFR2Q9UPR6 939 aaKnown RBP4.78□□□□□ -1.64
USP54-217ENST00000498213 FAM50BQ9Y247 325 aa4.78□□□□□ -1.64
USP54-217ENST00000498213 TSC22D4Q9Y3Q8 395 aa4.78□□□□□ -1.64
USP54-217ENST00000498213 TNPO3Q9Y5L0 923 aaKnown RBP4.78□□□□□ -1.64
USP54-217ENST00000498213 LRRFIP2Q9Y608 721 aaKnown RBP4.78□□□□□ -1.64
USP54-217ENST00000498213 ECM29Q5VYK3 1845 aa4.78□□□□□ -1.64
USP54-217ENST00000498213 USP9XQ93008 2570 aaPredicted RBP4.78□□□□□ -1.64
USP54-217ENST00000498213 ARAP2Q8WZ64 1704 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms