RNA–Protein interactions for RNA: ENST00000497498.1

CBX3-208, Transcript of chromobox 3, human

TSL 2

Gene CBX3, Length 922 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CBX3-208	ENST00000497498	URI1	O94763	535 aa	Predicted RBP	4.59	□□□□□ -1.67
CBX3-208	ENST00000497498	CHEK2	O96017	543 aa		4.59	□□□□□ -1.67
CBX3-208	ENST00000497498	NDUFV1	P49821	464 aa		4.59	□□□□□ -1.67
CBX3-208	ENST00000497498	ADK	P55263	362 aa	Known RBP	4.59	□□□□□ -1.67
CBX3-208	ENST00000497498	TCF15	Q12870	199 aa		4.59	□□□□□ -1.67
CBX3-208	ENST00000497498	HABP2	Q14520	560 aa	Predicted RBP	4.59	□□□□□ -1.67
CBX3-208	ENST00000497498	ABCB5	Q2M3G0	1257 aa		4.59	□□□□□ -1.67
CBX3-208	ENST00000497498	ZNF778	Q96MU6	729 aa		4.59	□□□□□ -1.67
CBX3-208	ENST00000497498	AMBRA1	Q9C0C7	1298 aa		4.59	□□□□□ -1.67
CBX3-208	ENST00000497498	BRD9	Q9H8M2	597 aa		4.59	□□□□□ -1.67
CBX3-208	ENST00000497498	GPR35	Q9HC97	309 aa		4.59	□□□□□ -1.67
CBX3-208	ENST00000497498	FLRT1	Q9NZU1	646 aa		4.59	□□□□□ -1.67
CBX3-208	ENST00000497498	ZNF70	Q9UC06	446 aa	Predicted RBP	4.59	□□□□□ -1.67
CBX3-208	ENST00000497498		F5H697	171 aa		4.58	□□□□□ -1.68
CBX3-208	ENST00000497498	TRIAP1	O43715	76 aa		4.58	□□□□□ -1.68
CBX3-208	ENST00000497498	SOAT2	O75908	522 aa		4.58	□□□□□ -1.68
CBX3-208	ENST00000497498	TTLL1	O95922	423 aa		4.58	□□□□□ -1.68
CBX3-208	ENST00000497498	ERBB2	P04626	1255 aa		4.58	□□□□□ -1.68
CBX3-208	ENST00000497498	GJB1	P08034	283 aa		4.58	□□□□□ -1.68
CBX3-208	ENST00000497498	RHO	P08100	348 aa		4.58	□□□□□ -1.68
CBX3-208	ENST00000497498	ZNF81	P51508	661 aa		4.58	□□□□□ -1.68
CBX3-208	ENST00000497498	EXOSC10	Q01780	885 aa	Known RBP	4.58	□□□□□ -1.68
CBX3-208	ENST00000497498	TFF2	Q03403	129 aa		4.58	□□□□□ -1.68
CBX3-208	ENST00000497498	FAM153C	Q494X1	144 aa		4.58	□□□□□ -1.68
CBX3-208	ENST00000497498	EPHA10	Q5JZY3	1008 aa		4.58	□□□□□ -1.68
CBX3-208	ENST00000497498	SLC4A10	Q6U841	1118 aa		4.58	□□□□□ -1.68
CBX3-208	ENST00000497498	RASAL3	Q86YV0	1011 aa		4.58	□□□□□ -1.68
CBX3-208	ENST00000497498	SEMA6D	Q8NFY4	1073 aa		4.58	□□□□□ -1.68
CBX3-208	ENST00000497498	FBXO41	Q8TF61	875 aa		4.58	□□□□□ -1.68
CBX3-208	ENST00000497498	DDB2	Q92466	427 aa		4.58	□□□□□ -1.68
CBX3-208	ENST00000497498	SLC13A1	Q9BZW2	595 aa		4.58	□□□□□ -1.68
CBX3-208	ENST00000497498	CCDC8	Q9H0W5	538 aa	Predicted RBP	4.58	□□□□□ -1.68
CBX3-208	ENST00000497498	SMOC2	Q9H3U7	446 aa		4.58	□□□□□ -1.68
CBX3-208	ENST00000497498	SERTAD4	Q9NUC0	356 aa		4.58	□□□□□ -1.68
CBX3-208	ENST00000497498	GNL3L	Q9NVN8	582 aa	Known RBP	4.58	□□□□□ -1.68
CBX3-208	ENST00000497498	EHD3	Q9NZN3	535 aa		4.58	□□□□□ -1.68
CBX3-208	ENST00000497498	CFAP97	Q9P2B7	532 aa		4.58	□□□□□ -1.68
CBX3-208	ENST00000497498	ZNF785	A8K8V0	405 aa		4.57	□□□□□ -1.68
CBX3-208	ENST00000497498	FTH1P19	P0C7X4	201 aa		4.57	□□□□□ -1.68
CBX3-208	ENST00000497498	DRD4	P21917	467 aa		4.57	□□□□□ -1.68
CBX3-208	ENST00000497498	GUCY2F	P51841	1108 aa		4.57	□□□□□ -1.68
CBX3-208	ENST00000497498	PSMC1	P62191	440 aa	Known RBP	4.57	□□□□□ -1.68
CBX3-208	ENST00000497498	SSBP2	P81877	361 aa	Predicted RBP	4.57	□□□□□ -1.68
CBX3-208	ENST00000497498	UAP1L1	Q3KQV9	507 aa		4.57	□□□□□ -1.68
CBX3-208	ENST00000497498	EFCAB2	Q5VUJ9	269 aa		4.57	□□□□□ -1.68
CBX3-208	ENST00000497498	ZNF425	Q6IV72	752 aa		4.57	□□□□□ -1.68
CBX3-208	ENST00000497498	TAF2	Q6P1X5	1199 aa		4.57	□□□□□ -1.68
CBX3-208	ENST00000497498	SLC30A10	Q6XR72	485 aa		4.57	□□□□□ -1.68
CBX3-208	ENST00000497498	FAM90A1	Q86YD7	464 aa		4.57	□□□□□ -1.68
CBX3-208	ENST00000497498	FAM109A	Q8N4B1	249 aa		4.57	□□□□□ -1.68
CBX3-208	ENST00000497498	PSD4	Q8NDX1	1056 aa		4.57	□□□□□ -1.68
CBX3-208	ENST00000497498	CNPPD1	Q9BV87	410 aa		4.57	□□□□□ -1.68
CBX3-208	ENST00000497498	NR2E3	Q9Y5X4	410 aa		4.57	□□□□□ -1.68
CBX3-208	ENST00000497498	WDR91	A4D1P6	747 aa		4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	LINC01548	A6NM66	108 aa		4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	GNAI3	P08754	354 aa		4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	NR2F6	P10588	404 aa		4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	ZFX	P17010	805 aa	Predicted RBP	4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	ITGB6	P18564	788 aa		4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	CDK11B	P21127	795 aa	Known RBP	4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	PCSK6	P29122	969 aa		4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	PRDX5	P30044	214 aa		4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	CDKN1C	P49918	316 aa	Predicted RBP	4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	TOB1	P50616	345 aa	Predicted RBP	4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	CCT8	P50990	548 aa		4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	ZNF135	P52742	658 aa	Predicted RBP	4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	GNAI1	P63096	354 aa		4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	ITK	Q08881	620 aa		4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	SLC10A2	Q12908	348 aa	Predicted RBP	4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	KIF22	Q14807	665 aa		4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	ODF1	Q14990	250 aa		4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	LLGL1	Q15334	1064 aa		4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	PLAC9	Q5JTB6	97 aa		4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	PPP1R32	Q7Z5V6	425 aa		4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	FKBP10	Q96AY3	582 aa		4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	ACTRT3	Q9BYD9	372 aa		4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	TPSD1	Q9BZJ3	242 aa		4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	SIK2	Q9H0K1	926 aa		4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	MRPS18A	Q9NVS2	196 aa	Known RBP	4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	PADI4	Q9UM07	663 aa		4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	POLH	Q9Y253	713 aa		4.56	□□□□□ -1.68
CBX3-208	ENST00000497498	KRTAP29-1	A8MX34	341 aa	Predicted RBP	4.55	□□□□□ -1.68
CBX3-208	ENST00000497498	TARM1	B6A8C7	271 aa		4.55	□□□□□ -1.68
CBX3-208	ENST00000497498	KATNA1	O75449	491 aa		4.55	□□□□□ -1.68
CBX3-208	ENST00000497498	ARIH2	O95376	493 aa		4.55	□□□□□ -1.68
CBX3-208	ENST00000497498	LATS1	O95835	1130 aa		4.55	□□□□□ -1.68
CBX3-208	ENST00000497498	RARB	P10826	455 aa		4.55	□□□□□ -1.68
CBX3-208	ENST00000497498	SMARCA1	P28370	1054 aa		4.55	□□□□□ -1.68
CBX3-208	ENST00000497498	PIK3CG	P48736	1102 aa		4.55	□□□□□ -1.68
CBX3-208	ENST00000497498	BMPR2	Q13873	1038 aa		4.55	□□□□□ -1.68
CBX3-208	ENST00000497498	EZH2	Q15910	746 aa	Known RBP	4.55	□□□□□ -1.68
CBX3-208	ENST00000497498	RBM20	Q5T481	1227 aa	Known RBP	4.55	□□□□□ -1.68
CBX3-208	ENST00000497498	LCE1A	Q5T7P2	110 aa		4.55	□□□□□ -1.68
CBX3-208	ENST00000497498	SUMO4	Q6EEV6	95 aa		4.55	□□□□□ -1.68
CBX3-208	ENST00000497498	CAMKK1	Q8N5S9	505 aa		4.55	□□□□□ -1.68
CBX3-208	ENST00000497498		Q8N9P0	234 aa	Predicted RBP	4.55	□□□□□ -1.68
CBX3-208	ENST00000497498	C3orf20	Q8ND61	904 aa		4.55	□□□□□ -1.68
CBX3-208	ENST00000497498	DKK3	Q9UBP4	350 aa		4.55	□□□□□ -1.68
CBX3-208	ENST00000497498	SERGEF	Q9UGK8	458 aa		4.55	□□□□□ -1.68
CBX3-208	ENST00000497498	AGAP1	Q9UPQ3	857 aa		4.55	□□□□□ -1.68

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