RNA–Protein interactions for RNA: ENST00000495688.5

PTPN7-217, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 1 (best)

Gene PTPN7, Length 2,689 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-217	ENST00000495688	NSMCE1	Q8WV22	266 aa		13.76	□□□□□ -0.21
PTPN7-217	ENST00000495688	ZBED3	Q96IU2	234 aa	Predicted RBP	13.76	□□□□□ -0.21
PTPN7-217	ENST00000495688	VPS37B	Q9H9H4	285 aa		13.76	□□□□□ -0.21
PTPN7-217	ENST00000495688		K7ERI5	159 aa		13.76	□□□□□ -0.21
PTPN7-217	ENST00000495688	MMP8	P22894	467 aa		13.76	□□□□□ -0.21
PTPN7-217	ENST00000495688	BRD2	P25440	801 aa	Known RBP	13.76	□□□□□ -0.21
PTPN7-217	ENST00000495688	IL9R	Q01113	521 aa		13.76	□□□□□ -0.21
PTPN7-217	ENST00000495688	PLCB3	Q01970	1234 aa		13.76	□□□□□ -0.21
PTPN7-217	ENST00000495688	FSTL1	Q12841	308 aa		13.76	□□□□□ -0.21
PTPN7-217	ENST00000495688	NCOA4	Q13772	614 aa		13.76	□□□□□ -0.21
PTPN7-217	ENST00000495688	BBOF1	Q8ND07	529 aa		13.76	□□□□□ -0.21
PTPN7-217	ENST00000495688	TMEM237	Q96Q45	408 aa		13.76	□□□□□ -0.21
PTPN7-217	ENST00000495688	TRABD	Q9H4I3	376 aa		13.76	□□□□□ -0.21
PTPN7-217	ENST00000495688	SCIN	Q9Y6U3	715 aa		13.76	□□□□□ -0.21
PTPN7-217	ENST00000495688	TMEM191C	A6NGB0	347 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	TMEM191B	P0C7N4	346 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	FGFR1	P11362	822 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	TNFSF9	P41273	254 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	MSH2	P43246	934 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	RTP1	P59025	263 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	DYNLT1	P63172	113 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	CYP4A22	Q5TCH4	519 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	ALLC	Q8N6M5	410 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	MTMR14	Q8NCE2	650 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	CFAP57	Q96MR6	1250 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	MYLK2	Q9H1R3	596 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	EBF2	Q9HAK2	575 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	ETNK1	Q9HBU6	452 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	ZNRF3	Q9ULT6	936 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	PHTF1	Q9UMS5	762 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	CNTNAP2	Q9UHC6	1331 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	COL11A1	P12107	1806 aa	Predicted RBP	13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	LRRD1	A4D1F6	860 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	ALAD	P13716	330 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	C1QBP	Q07021	282 aa	Known RBP	13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	MKRN3	Q13064	507 aa	Known RBP	13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	EFTUD2	Q15029	972 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	SLC1A5	Q15758	541 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	TRIM72	Q6ZMU5	477 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	SPOCD1	Q6ZMY3	1216 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	ERICH1	Q86X53	443 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	NSUN6	Q8TEA1	469 aa	Known RBP	13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	DENND1A	Q8TEH3	1009 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	UTP4	Q969X6	686 aa	Known RBP	13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	ERP27	Q96DN0	273 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	VCPIP1	Q96JH7	1222 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	IP6K2	Q9UHH9	426 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	STYXL1	Q9Y6J8	313 aa		13.75	□□□□□ -0.21
PTPN7-217	ENST00000495688	ITGBL1	O95965	494 aa	Predicted RBP	13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	ABHD2	P08910	425 aa		13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	POTEJ	P0CG39	1038 aa		13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	GBP2	P32456	591 aa	Predicted RBP	13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	SMTNL2	Q2TAL5	461 aa		13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	EAPP	Q56P03	285 aa	Predicted RBP	13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	PRAMEF18	Q5VWM3	479 aa		13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	RNF43	Q68DV7	783 aa		13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	DCUN1D2	Q6PH85	259 aa		13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	RCOR2	Q8IZ40	523 aa		13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	RTKN2	Q8IZC4	609 aa		13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	AGBL3	Q8NEM8	1001 aa		13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	DEPTOR	Q8TB45	409 aa		13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	C12orf65	Q9H3J6	166 aa	Known RBP	13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	ZNF214	Q9UL59	606 aa	Predicted RBP	13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	CHKB	Q9Y259	395 aa		13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	ACTL7B	Q9Y614	415 aa		13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	SGK1	O00141	431 aa		13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	PEX10	O60683	326 aa		13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	TJP3	O95049	919 aa		13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	UNC5C	O95185	931 aa		13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	CA4	P22748	312 aa		13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	HMGB2	P26583	209 aa	Known RBP	13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	TARS	P26639	723 aa	Known RBP	13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	CDC25C	P30307	473 aa		13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	RNASEL	Q05823	741 aa	Known RBP	13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	PDIA2	Q13087	525 aa	Known RBP	13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	XKR3	Q5GH77	459 aa		13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	KCNT1	Q5JUK3	1230 aa		13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	TACO1	Q9BSH4	297 aa	Known RBP	13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	MAK16	Q9BXY0	300 aa	Known RBP	13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688	TJP2	Q9UDY2	1190 aa		13.74	□□□□□ -0.21
PTPN7-217	ENST00000495688		A0A0B4J269	797 aa		13.73	□□□□□ -0.21
PTPN7-217	ENST00000495688	DIAPH2	O60879	1101 aa		13.73	□□□□□ -0.21
PTPN7-217	ENST00000495688	WEE2	P0C1S8	567 aa		13.73	□□□□□ -0.21
PTPN7-217	ENST00000495688	CCNB1	P14635	433 aa		13.73	□□□□□ -0.21
PTPN7-217	ENST00000495688	HMGCS2	P54868	508 aa		13.73	□□□□□ -0.21
PTPN7-217	ENST00000495688	GDF10	P55107	478 aa		13.73	□□□□□ -0.21
PTPN7-217	ENST00000495688	TMEM132B	Q14DG7	1078 aa		13.73	□□□□□ -0.21
PTPN7-217	ENST00000495688	OASL	Q15646	514 aa	Known RBP	13.73	□□□□□ -0.21
PTPN7-217	ENST00000495688	NBPF12	Q5TAG4	269 aa	Predicted RBP	13.73	□□□□□ -0.21
PTPN7-217	ENST00000495688	RNASEH2B	Q5TBB1	312 aa	Known RBP	13.73	□□□□□ -0.21
PTPN7-217	ENST00000495688	SCARA5	Q6ZMJ2	495 aa		13.73	□□□□□ -0.21
PTPN7-217	ENST00000495688	ZBTB33	Q86T24	672 aa		13.73	□□□□□ -0.21
PTPN7-217	ENST00000495688	NIM1K	Q8IY84	436 aa		13.73	□□□□□ -0.21
PTPN7-217	ENST00000495688	RBM41	Q96IZ5	413 aa	Known RBP	13.73	□□□□□ -0.21
PTPN7-217	ENST00000495688	MTMR12	Q9C0I1	747 aa		13.73	□□□□□ -0.21
PTPN7-217	ENST00000495688	PORCN	Q9H237	461 aa		13.73	□□□□□ -0.21
PTPN7-217	ENST00000495688	CNTN6	Q9UQ52	1028 aa		13.73	□□□□□ -0.21
PTPN7-217	ENST00000495688	hCG_1818297	A0A087WSY0	165 aa		13.73	□□□□□ -0.21
PTPN7-217	ENST00000495688	MAFG	O15525	162 aa		13.73	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 16 ms