RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 SUPT20HL1Q3ZLR7 823 aa5.33□□□□□ -1.56
VPS50-219ENST00000495039 PRAMEF17Q5VTA0 474 aa5.33□□□□□ -1.56
VPS50-219ENST00000495039 AWAT2Q6E213 333 aa5.33□□□□□ -1.56
VPS50-219ENST00000495039 SLC29A4Q7RTT9 530 aa5.33□□□□□ -1.56
VPS50-219ENST00000495039 SSH1Q8WYL5 1049 aa5.33□□□□□ -1.56
VPS50-219ENST00000495039 TBC1D5Q92609 795 aa5.33□□□□□ -1.56
VPS50-219ENST00000495039 QTRT1Q9BXR0 403 aaKnown RBP5.33□□□□□ -1.56
VPS50-219ENST00000495039 ADGRE3Q9BY15 652 aa5.33□□□□□ -1.56
VPS50-219ENST00000495039 ACTRT3Q9BYD9 372 aa5.33□□□□□ -1.56
VPS50-219ENST00000495039 WASHC2AQ641Q2 1341 aa5.32□□□□□ -1.56
VPS50-219ENST00000495039 POLRMTO00411 1230 aaKnown RBP5.32□□□□□ -1.56
VPS50-219ENST00000495039 SGTAO43765 313 aa5.32□□□□□ -1.56
VPS50-219ENST00000495039 PRKD3O94806 890 aa5.32□□□□□ -1.56
VPS50-219ENST00000495039 TOP3BO95985 862 aaKnown RBP5.32□□□□□ -1.56
VPS50-219ENST00000495039 TUBB4AP04350 444 aa5.32□□□□□ -1.56
VPS50-219ENST00000495039 CCKBRP32239 447 aa5.32□□□□□ -1.56
VPS50-219ENST00000495039 MMP13P45452 471 aa5.32□□□□□ -1.56
VPS50-219ENST00000495039 PLCD1P51178 756 aa5.32□□□□□ -1.56
VPS50-219ENST00000495039 LAMB3Q13751 1172 aa5.32□□□□□ -1.56
VPS50-219ENST00000495039 RAB39AQ14964 217 aa5.32□□□□□ -1.56
VPS50-219ENST00000495039 CEP78Q5JTW2 689 aa5.32□□□□□ -1.56
VPS50-219ENST00000495039 KRTAP5-11Q6L8G4 156 aa5.32□□□□□ -1.56
VPS50-219ENST00000495039 ZNF804AQ7Z570 1209 aa5.32□□□□□ -1.56
VPS50-219ENST00000495039 AMOTL1Q8IY63 956 aa5.32□□□□□ -1.56
VPS50-219ENST00000495039 AFAP1L2Q8N4X5 818 aa5.32□□□□□ -1.56
VPS50-219ENST00000495039 PPM1NQ8N819 430 aa5.32□□□□□ -1.56
VPS50-219ENST00000495039 FBXO41Q8TF61 875 aa5.32□□□□□ -1.56
VPS50-219ENST00000495039 REPS1Q96D71 796 aa5.32□□□□□ -1.56
VPS50-219ENST00000495039 SH2D3AQ9BRG2 576 aa5.32□□□□□ -1.56
VPS50-219ENST00000495039 ARHGEF3Q9NR81 526 aa5.32□□□□□ -1.56
VPS50-219ENST00000495039 ELOVL5Q9NYP7 299 aa5.32□□□□□ -1.56
VPS50-219ENST00000495039 CNTNAP2Q9UHC6 1331 aa5.31□□□□□ -1.56
VPS50-219ENST00000495039 TISP43B9A030 160 aa5.31□□□□□ -1.56
VPS50-219ENST00000495039 E9PLN8 166 aa5.31□□□□□ -1.56
VPS50-219ENST00000495039 CPEP16870 476 aa5.31□□□□□ -1.56
VPS50-219ENST00000495039 PCSK6P29122 969 aa5.31□□□□□ -1.56
VPS50-219ENST00000495039 TKTP29401 623 aaKnown RBP5.31□□□□□ -1.56
VPS50-219ENST00000495039 TBCCQ15814 346 aa5.31□□□□□ -1.56
VPS50-219ENST00000495039 CT47A1Q5JQC4 288 aaPredicted RBP5.31□□□□□ -1.56
VPS50-219ENST00000495039 TEDDM1Q5T9Z0 273 aa5.31□□□□□ -1.56
VPS50-219ENST00000495039 SLC2A7Q6PXP3 512 aa5.31□□□□□ -1.56
VPS50-219ENST00000495039 FANCBQ8NB91 859 aa5.31□□□□□ -1.56
VPS50-219ENST00000495039 CHAC2Q8WUX2 184 aa5.31□□□□□ -1.56
VPS50-219ENST00000495039 ATRIPQ8WXE1 791 aa5.31□□□□□ -1.56
VPS50-219ENST00000495039 HDAC10Q969S8 669 aa5.31□□□□□ -1.56
VPS50-219ENST00000495039 HMCESQ96FZ2 354 aa5.31□□□□□ -1.56
VPS50-219ENST00000495039 VKORC1Q9BQB6 163 aa5.31□□□□□ -1.56
VPS50-219ENST00000495039 DKK3Q9UBP4 350 aa5.31□□□□□ -1.56
VPS50-219ENST00000495039 PCDHA13Q9Y5I0 950 aa5.31□□□□□ -1.56
VPS50-219ENST00000495039 SMIM22K7EJ46 135 aa5.3□□□□□ -1.56
VPS50-219ENST00000495039 SOAT2O75908 522 aa5.3□□□□□ -1.56
VPS50-219ENST00000495039 FAM163BP0C2L3 166 aa5.3□□□□□ -1.56
VPS50-219ENST00000495039 ZNF280AP59817 542 aaPredicted RBP5.3□□□□□ -1.56
VPS50-219ENST00000495039 SLC30A10Q6XR72 485 aa5.3□□□□□ -1.56
VPS50-219ENST00000495039 GADL1Q6ZQY3 521 aa5.3□□□□□ -1.56
VPS50-219ENST00000495039 SCAMP4Q969E2 229 aa5.3□□□□□ -1.56
VPS50-219ENST00000495039 AMBRA1Q9C0C7 1298 aa5.3□□□□□ -1.56
VPS50-219ENST00000495039 TUBA8Q9NY65 449 aaPredicted RBP5.3□□□□□ -1.56
VPS50-219ENST00000495039 PRRT4C9JH25 899 aa5.29□□□□□ -1.56
VPS50-219ENST00000495039 MYO1FO00160 1098 aa5.29□□□□□ -1.56
VPS50-219ENST00000495039 INSIG1O15503 277 aa5.29□□□□□ -1.56
VPS50-219ENST00000495039 NHLRC4P0CG21 123 aaPredicted RBP5.29□□□□□ -1.56
VPS50-219ENST00000495039 JUPP14923 745 aa5.29□□□□□ -1.56
VPS50-219ENST00000495039 NR4A2P43354 598 aa5.29□□□□□ -1.56
VPS50-219ENST00000495039 ERVK-21P61565 698 aa5.29□□□□□ -1.56
VPS50-219ENST00000495039 RAPGEF1Q13905 1077 aa5.29□□□□□ -1.56
VPS50-219ENST00000495039 AARS2Q5JTZ9 985 aaKnown RBP5.29□□□□□ -1.56
VPS50-219ENST00000495039 RUSC1-AS1Q66K80 236 aa5.29□□□□□ -1.56
VPS50-219ENST00000495039 ANKRD16Q6P6B7 361 aa5.29□□□□□ -1.56
VPS50-219ENST00000495039 PDSS2Q86YH6 399 aa5.29□□□□□ -1.56
VPS50-219ENST00000495039 PRSS22Q9GZN4 317 aa5.29□□□□□ -1.56
VPS50-219ENST00000495039 VPS16Q9H269 839 aa5.29□□□□□ -1.56
VPS50-219ENST00000495039 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.29□□□□□ -1.56
VPS50-219ENST00000495039 ZNF580Q9UK33 172 aa5.29□□□□□ -1.56
VPS50-219ENST00000495039 H3BNC9 293 aa5.28□□□□□ -1.56
VPS50-219ENST00000495039 ZNF213O14771 459 aa5.28□□□□□ -1.56
VPS50-219ENST00000495039 GPR39O43194 453 aa5.28□□□□□ -1.56
VPS50-219ENST00000495039 ONECUT2O95948 504 aa5.28□□□□□ -1.56
VPS50-219ENST00000495039 SNHG28P0DPA3 235 aa5.28□□□□□ -1.56
VPS50-219ENST00000495039 ITGALP20701 1170 aa5.28□□□□□ -1.56
VPS50-219ENST00000495039 LPOP22079 712 aaPredicted RBP5.28□□□□□ -1.56
VPS50-219ENST00000495039 ALDH9A1P49189 494 aa5.28□□□□□ -1.56
VPS50-219ENST00000495039 SLC16A1P53985 500 aa5.28□□□□□ -1.56
VPS50-219ENST00000495039 TLE1Q04724 770 aa5.28□□□□□ -1.56
VPS50-219ENST00000495039 ZNF260Q3ZCT1 412 aa5.28□□□□□ -1.56
VPS50-219ENST00000495039 RBM20Q5T481 1227 aaKnown RBP5.28□□□□□ -1.56
VPS50-219ENST00000495039 PXDC1Q5TGL8 231 aa5.28□□□□□ -1.56
VPS50-219ENST00000495039 SPATS2Q86XZ4 545 aaKnown RBP5.28□□□□□ -1.56
VPS50-219ENST00000495039 KRT73Q86Y46 540 aa5.28□□□□□ -1.56
VPS50-219ENST00000495039 PSD4Q8NDX1 1056 aa5.28□□□□□ -1.56
VPS50-219ENST00000495039 KLHDC4Q8TBB5 520 aa5.28□□□□□ -1.56
VPS50-219ENST00000495039 FAM136AQ96C01 138 aa5.28□□□□□ -1.56
VPS50-219ENST00000495039 MRGPRX4Q96LA9 322 aa5.28□□□□□ -1.56
VPS50-219ENST00000495039 SPRTNQ9H040 489 aaPredicted RBP5.28□□□□□ -1.56
VPS50-219ENST00000495039 ETAA1Q9NY74 926 aa5.28□□□□□ -1.56
VPS50-219ENST00000495039 CALCOCO1Q9P1Z2 691 aa5.28□□□□□ -1.56
VPS50-219ENST00000495039 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.28□□□□□ -1.56
VPS50-219ENST00000495039 TRIM75PA6NK02 468 aa5.27□□□□□ -1.57
VPS50-219ENST00000495039 KCNU1A8MYU2 1149 aa5.27□□□□□ -1.57
VPS50-219ENST00000495039 DNAJB5O75953 348 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms