RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 CSPG5O95196 566 aa20.69■□□□□ 0.9
USP39-218ENST00000493829 PDGFRBP09619 1106 aa20.69■□□□□ 0.9
USP39-218ENST00000493829 SKILP12757 684 aa20.69■□□□□ 0.9
USP39-218ENST00000493829 ACAT1P24752 427 aaKnown RBP20.69■□□□□ 0.9
USP39-218ENST00000493829 MLLT1Q03111 559 aaPredicted RBP20.69■□□□□ 0.9
USP39-218ENST00000493829 FAM71AQ8IYT1 594 aa20.69■□□□□ 0.9
USP39-218ENST00000493829 TMEM169Q96HH4 297 aa20.69■□□□□ 0.9
USP39-218ENST00000493829 VN1R3Q9BXE9 311 aa20.69■□□□□ 0.9
USP39-218ENST00000493829 ELOVL4Q9GZR5 314 aa20.69■□□□□ 0.9
USP39-218ENST00000493829 DPEP3Q9H4B8 488 aa20.69■□□□□ 0.9
USP39-218ENST00000493829 AAASQ9NRG9 546 aa20.69■□□□□ 0.9
USP39-218ENST00000493829 SPG21Q9NZD8 308 aa20.69■□□□□ 0.9
USP39-218ENST00000493829 YBX2Q9Y2T7 364 aaKnown RBP20.69■□□□□ 0.9
USP39-218ENST00000493829 PCDHB12Q9Y5F1 795 aa20.69■□□□□ 0.9
USP39-218ENST00000493829 A8MXQ7 604 aa20.68■□□□□ 0.9
USP39-218ENST00000493829 INCA1Q0VD86 236 aa20.68■□□□□ 0.9
USP39-218ENST00000493829 TSR1Q2NL82 804 aaKnown RBP20.68■□□□□ 0.9
USP39-218ENST00000493829 TAS1R1Q7RTX1 841 aa20.68■□□□□ 0.9
USP39-218ENST00000493829 METTL23Q86XA0 190 aa20.68■□□□□ 0.9
USP39-218ENST00000493829 WHAMMQ8TF30 809 aa20.68■□□□□ 0.9
USP39-218ENST00000493829 FAXDC2Q96IV6 333 aa20.68■□□□□ 0.9
USP39-218ENST00000493829 C17orf80Q9BSJ5 609 aa20.68■□□□□ 0.9
USP39-218ENST00000493829 DDX43Q9NXZ2 648 aaKnown RBP20.68■□□□□ 0.9
USP39-218ENST00000493829 PUF60Q9UHX1 559 aaKnown RBP20.68■□□□□ 0.9
USP39-218ENST00000493829 MYO6Q9UM54 1294 aa20.68■□□□□ 0.9
USP39-218ENST00000493829 BARX2Q9UMQ3 279 aaPredicted RBP20.68■□□□□ 0.9
USP39-218ENST00000493829 VWA8A3KMH1 1905 aa20.68■□□□□ 0.9
USP39-218ENST00000493829 FAM170AA1A519 330 aa20.67■□□□□ 0.9
USP39-218ENST00000493829 TACC1O75410 805 aa20.67■□□□□ 0.9
USP39-218ENST00000493829 WARSP23381 471 aaKnown RBP20.67■□□□□ 0.9
USP39-218ENST00000493829 LMO2P25791 158 aa20.67■□□□□ 0.9
USP39-218ENST00000493829 SSTR3P32745 418 aaPredicted RBP20.67■□□□□ 0.9
USP39-218ENST00000493829 PSMC1P62191 440 aaKnown RBP20.67■□□□□ 0.9
USP39-218ENST00000493829 TDRD12Q587J7 1177 aaKnown RBP20.67■□□□□ 0.9
USP39-218ENST00000493829 DPH6Q7L8W6 267 aa20.67■□□□□ 0.9
USP39-218ENST00000493829 LIMS2Q7Z4I7 341 aa20.67■□□□□ 0.9
USP39-218ENST00000493829 SLC47A2Q86VL8 602 aa20.67■□□□□ 0.9
USP39-218ENST00000493829 TDHQ8IZJ6 230 aa20.67■□□□□ 0.9
USP39-218ENST00000493829 CLP1Q92989 425 aaKnown RBP20.67■□□□□ 0.9
USP39-218ENST00000493829 JAKMIP2Q96AA8 810 aa20.67■□□□□ 0.9
USP39-218ENST00000493829 ZNHIT6Q9NWK9 470 aaKnown RBP20.67■□□□□ 0.9
USP39-218ENST00000493829 PLEKP08567 350 aaPredicted RBP20.67■□□□□ 0.9
USP39-218ENST00000493829 FERP16591 822 aa20.67■□□□□ 0.9
USP39-218ENST00000493829 CLCN1P35523 988 aa20.67■□□□□ 0.9
USP39-218ENST00000493829 GNL1P36915 607 aaPredicted RBP20.67■□□□□ 0.9
USP39-218ENST00000493829 RAD23BP54727 409 aa20.67■□□□□ 0.9
USP39-218ENST00000493829 CCDC142Q17RM4 750 aa20.67■□□□□ 0.9
USP39-218ENST00000493829 TAF3Q5VWG9 929 aa20.67■□□□□ 0.9
USP39-218ENST00000493829 OVOS1Q6IE37 1185 aa20.67■□□□□ 0.9
USP39-218ENST00000493829 ACOT1Q86TX2 421 aa20.67■□□□□ 0.9
USP39-218ENST00000493829 TMEM86AQ8N2M4 240 aa20.67■□□□□ 0.9
USP39-218ENST00000493829 SLC20A1Q8WUM9 679 aa20.67■□□□□ 0.9
USP39-218ENST00000493829 LPIN3Q9BQK8 851 aa20.67■□□□□ 0.9
USP39-218ENST00000493829 PBX4Q9BYU1 374 aa20.67■□□□□ 0.9
USP39-218ENST00000493829 NUCKS1Q9H1E3 243 aaKnown RBP20.67■□□□□ 0.9
USP39-218ENST00000493829 DSEQ9UL01 958 aa20.67■□□□□ 0.9
USP39-218ENST00000493829 PCDHA11Q9Y5I1 949 aa20.67■□□□□ 0.9
USP39-218ENST00000493829 PLXNA4Q9HCM2 1894 aa20.66■□□□□ 0.9
USP39-218ENST00000493829 FGF18O76093 207 aa20.66■□□□□ 0.9
USP39-218ENST00000493829 CD19P15391 556 aa20.66■□□□□ 0.9
USP39-218ENST00000493829 PAX3P23760 479 aa20.66■□□□□ 0.9
USP39-218ENST00000493829 BMP8BP34820 402 aa20.66■□□□□ 0.9
USP39-218ENST00000493829 PPM1AP35813 382 aa20.66■□□□□ 0.9
USP39-218ENST00000493829 ZNF132P52740 706 aa20.66■□□□□ 0.9
USP39-218ENST00000493829 YWHAHQ04917 246 aaPredicted RBP20.66■□□□□ 0.9
USP39-218ENST00000493829 KLHL30Q0D2K2 578 aa20.66■□□□□ 0.9
USP39-218ENST00000493829 RTP2Q5QGT7 225 aa20.66■□□□□ 0.9
USP39-218ENST00000493829 WDR59Q6PJI9 974 aa20.66■□□□□ 0.9
USP39-218ENST00000493829 KLHL23Q8NBE8 558 aa20.66■□□□□ 0.9
USP39-218ENST00000493829 SLC4A11Q8NBS3 891 aa20.66■□□□□ 0.9
USP39-218ENST00000493829 ZNF830Q96NB3 372 aaPredicted RBP20.66■□□□□ 0.9
USP39-218ENST00000493829 PANX2Q96RD6 677 aa20.66■□□□□ 0.9
USP39-218ENST00000493829 NT5C1AQ9BXI3 368 aa20.66■□□□□ 0.9
USP39-218ENST00000493829 NKX2-4Q9H2Z4 354 aa20.66■□□□□ 0.9
USP39-218ENST00000493829 AIPL1Q9NZN9 384 aa20.66■□□□□ 0.9
USP39-218ENST00000493829 STXBP5LQ9Y2K9 1186 aa20.66■□□□□ 0.9
USP39-218ENST00000493829 ARHGEF37A1IGU5 675 aa20.65■□□□□ 0.9
USP39-218ENST00000493829 C2CD2LO14523 706 aa20.65■□□□□ 0.9
USP39-218ENST00000493829 CYP11A1P05108 521 aa20.65■□□□□ 0.9
USP39-218ENST00000493829 BRD2P25440 801 aaKnown RBP20.65■□□□□ 0.9
USP39-218ENST00000493829 GNA15P30679 374 aa20.65■□□□□ 0.9
USP39-218ENST00000493829 PDE6CP51160 858 aa20.65■□□□□ 0.9
USP39-218ENST00000493829 ELAVL2Q12926 359 aaKnown RBP20.65■□□□□ 0.9
USP39-218ENST00000493829 VARS2Q5ST30 1063 aaKnown RBP20.65■□□□□ 0.9
USP39-218ENST00000493829 IRF2BP2Q7Z5L9 587 aa20.65■□□□□ 0.9
USP39-218ENST00000493829 NOP9Q86U38 636 aaKnown RBP20.65■□□□□ 0.9
USP39-218ENST00000493829 TMEM176AQ96HP8 235 aa20.65■□□□□ 0.9
USP39-218ENST00000493829 HAUS4Q9H6D7 363 aa20.65■□□□□ 0.9
USP39-218ENST00000493829 FAM49BQ9NUQ9 324 aa20.65■□□□□ 0.9
USP39-218ENST00000493829 CNTN6Q9UQ52 1028 aa20.65■□□□□ 0.9
USP39-218ENST00000493829 PDE4DIPQ5VU43 2346 aa20.65■□□□□ 0.9
USP39-218ENST00000493829 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.64■□□□□ 0.9
USP39-218ENST00000493829 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.64■□□□□ 0.9
USP39-218ENST00000493829 SYN3O14994 580 aa20.64■□□□□ 0.9
USP39-218ENST00000493829 THAP12O43422 761 aa20.64■□□□□ 0.9
USP39-218ENST00000493829 ATP2C2O75185 946 aa20.64■□□□□ 0.9
USP39-218ENST00000493829 CYP11B1P15538 503 aa20.64■□□□□ 0.9
USP39-218ENST00000493829 TYMPP19971 482 aa20.64■□□□□ 0.9
USP39-218ENST00000493829 FGFR3P22607 806 aa20.64■□□□□ 0.9
USP39-218ENST00000493829 DNAJB2P25686 324 aa20.64■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms