RNA–Protein interactions for RNA: ENST00000493795.5

BRCA1-221, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5 BASIC

Gene BRCA1, Length 5,732 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-221ENST00000493795 USP33Q8TEY7 942 aa8.2□□□□□ -1.1
BRCA1-221ENST00000493795 SLC10A4Q96EP9 437 aa8.2□□□□□ -1.1
BRCA1-221ENST00000493795 RBM15Q96T37 977 aaKnown RBP eCLIP8.2□□□□□ -1.1
BRCA1-221ENST00000493795 VPS33BQ9H267 617 aa8.2□□□□□ -1.1
BRCA1-221ENST00000493795 VPS9D1Q9Y2B5 631 aa8.2□□□□□ -1.1
BRCA1-221ENST00000493795 APRTP07741 180 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 SNRPAP09012 282 aaKnown RBP8.19□□□□□ -1.1
BRCA1-221ENST00000493795 CLTBP09497 229 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 CCT3P49368 545 aaKnown RBP8.19□□□□□ -1.1
BRCA1-221ENST00000493795 EIF2B2P49770 351 aaKnown RBP8.19□□□□□ -1.1
BRCA1-221ENST00000493795 ITGA1P56199 1179 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 AP1S2P56377 157 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 ZSWIM7Q19AV6 140 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 IL31Q6EBC2 164 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 CYFIP1Q7L576 1253 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 FAM9CQ8IZT9 166 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 RIBC1Q8N443 379 aaPredicted RBP8.19□□□□□ -1.1
BRCA1-221ENST00000493795 MMGT1Q8N4V1 131 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 E2F7Q96AV8 911 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 KIF12Q96FN5 646 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 FAR2Q96K12 515 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 AGPAT1Q99943 283 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 BPIFA3Q9BQP9 254 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 KLHL11Q9NVR0 708 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 PNMA8BQ9ULN7 279 aaPredicted RBP8.19□□□□□ -1.1
BRCA1-221ENST00000493795 TRIM43BA6NCK2 446 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 TRIM49BA6NDI0 452 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 TBC1D12O60347 775 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 ATP1A1P05023 1023 aaKnown RBP8.19□□□□□ -1.1
BRCA1-221ENST00000493795 ADD2P35612 726 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 GPR1P46091 355 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 FNTAP49354 379 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 PMF1Q6P1K2 205 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 GLYCTKQ8IVS8 523 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 C4orf33Q8N1A6 199 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 CACTIN-AS1Q8N1I8 211 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 TMC2Q8TDI7 906 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 COPG2Q9UBF2 871 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 NEU2Q9Y3R4 380 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 TRAPPC3O43617 180 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 MED26O95402 600 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 GSTM1P09488 218 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 GPC1P35052 558 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 PTPN7P35236 360 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 RFX3P48380 749 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 PTPN12Q05209 780 aaKnown RBP8.19□□□□□ -1.1
BRCA1-221ENST00000493795 RESTQ13127 1097 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 TTLL4Q14679 1199 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 ZRANB3Q5FWF4 1079 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 RMND5BQ96G75 393 aaPredicted RBP8.19□□□□□ -1.1
BRCA1-221ENST00000493795 L3MBTL3Q96JM7 780 aaPredicted RBP8.19□□□□□ -1.1
BRCA1-221ENST00000493795 MED15Q96RN5 788 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 REXO4Q9GZR2 422 aaKnown RBP8.19□□□□□ -1.1
BRCA1-221ENST00000493795 RBAKQ9NYW8 714 aaPredicted RBP8.19□□□□□ -1.1
BRCA1-221ENST00000493795 UBA2Q9UBT2 640 aaPredicted RBP8.19□□□□□ -1.1
BRCA1-221ENST00000493795 AATKQ6ZMQ8 1374 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 PHF20L1A8MW92 1017 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 IGF2BP3O00425 579 aaKnown RBP eCLIP8.19□□□□□ -1.1
BRCA1-221ENST00000493795 HSMCR30P0CW71 290 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 POU1F1P28069 291 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 CHI3L2Q15782 390 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 PPP1R18Q6NYC8 613 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 TAF8Q7Z7C8 310 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 COMMD2Q86X83 199 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 CDK20Q8IZL9 346 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 NLGN1Q8N2Q7 840 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 HMG20AQ9NP66 347 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 WDR35Q9P2L0 1181 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 AMACRQ9UHK6 382 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 ATP6V1HQ9UI12 483 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 ZMYM4Q5VZL5 1548 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 SYCP2Q9BX26 1530 aa8.19□□□□□ -1.1
BRCA1-221ENST00000493795 CDC40O60508 579 aaKnown RBP eCLIP8.18□□□□□ -1.1
BRCA1-221ENST00000493795 CHRM3P20309 590 aa8.18□□□□□ -1.1
BRCA1-221ENST00000493795 C4orf22Q6V702 233 aa8.18□□□□□ -1.1
BRCA1-221ENST00000493795 HOMEZQ8IX15 550 aa8.18□□□□□ -1.1
BRCA1-221ENST00000493795 SVOPQ8N4V2 548 aa8.18□□□□□ -1.1
BRCA1-221ENST00000493795 ZNF614Q8N883 585 aa8.18□□□□□ -1.1
BRCA1-221ENST00000493795 CEP44Q9C0F1 390 aa8.18□□□□□ -1.1
BRCA1-221ENST00000493795 ARMC7Q9H6L4 198 aa8.18□□□□□ -1.1
BRCA1-221ENST00000493795 CATSPERBQ9H7T0 1116 aa8.18□□□□□ -1.1
BRCA1-221ENST00000493795 RAB6BQ9NRW1 208 aa8.18□□□□□ -1.1
BRCA1-221ENST00000493795 SF3B1O75533 1304 aaKnown RBP eCLIP8.18□□□□□ -1.11e-6■■■■■ 112.6
BRCA1-221ENST00000493795 FAM20BO75063 409 aa8.18□□□□□ -1.1
BRCA1-221ENST00000493795 TPP2P29144 1249 aaPredicted RBP8.18□□□□□ -1.1
BRCA1-221ENST00000493795 ADORA1P30542 326 aa8.18□□□□□ -1.1
BRCA1-221ENST00000493795 BCAP31P51572 246 aa8.18□□□□□ -1.1
BRCA1-221ENST00000493795 TTLL9Q3SXZ7 439 aa8.18□□□□□ -1.1
BRCA1-221ENST00000493795 ESRP1Q6NXG1 681 aaKnown RBP8.18□□□□□ -1.1
BRCA1-221ENST00000493795 SUGP1Q8IWZ8 645 aaKnown RBP8.18□□□□□ -1.1
BRCA1-221ENST00000493795 SLC25A41Q8N5S1 370 aa8.18□□□□□ -1.1
BRCA1-221ENST00000493795 ZNF579Q8NAF0 562 aaKnown RBP8.18□□□□□ -1.1
BRCA1-221ENST00000493795 POMGNT2Q8NAT1 580 aa8.18□□□□□ -1.1
BRCA1-221ENST00000493795 SENP7Q9BQF6 1050 aa8.18□□□□□ -1.1
BRCA1-221ENST00000493795 ZNF341Q9BYN7 854 aa8.18□□□□□ -1.1
BRCA1-221ENST00000493795 ROPN1BQ9BZX4 212 aaPredicted RBP8.18□□□□□ -1.1
BRCA1-221ENST00000493795 GREM2Q9H772 168 aa8.18□□□□□ -1.1
BRCA1-221ENST00000493795 ROPN1Q9HAT0 212 aaPredicted RBP8.18□□□□□ -1.1
BRCA1-221ENST00000493795 PAK5Q9P286 719 aa8.18□□□□□ -1.1
BRCA1-221ENST00000493795 FEM1BQ9UK73 627 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms