RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 STX17P56962 302 aa13.19□□□□□ -0.3
UPF3A-210ENST00000493727 POU5F1BQ06416 359 aa13.19□□□□□ -0.3
UPF3A-210ENST00000493727 MAPK6Q16659 721 aa13.19□□□□□ -0.3
UPF3A-210ENST00000493727 TPD52L1Q16890 204 aaPredicted RBP13.19□□□□□ -0.3
UPF3A-210ENST00000493727 BMT2Q1RMZ1 405 aa13.19□□□□□ -0.3
UPF3A-210ENST00000493727 COBLL1Q53SF7 1204 aa13.19□□□□□ -0.3
UPF3A-210ENST00000493727 CT47A1Q5JQC4 288 aaPredicted RBP13.19□□□□□ -0.3
UPF3A-210ENST00000493727 CDCA2Q69YH5 1023 aaPredicted RBP13.19□□□□□ -0.3
UPF3A-210ENST00000493727 AGMOQ6ZNB7 445 aa13.19□□□□□ -0.3
UPF3A-210ENST00000493727 EPM2AIP1Q7L775 607 aaPredicted RBP13.19□□□□□ -0.3
UPF3A-210ENST00000493727 HACE1Q8IYU2 909 aa13.19□□□□□ -0.3
UPF3A-210ENST00000493727 DHTKD1Q96HY7 919 aaPredicted RBP13.19□□□□□ -0.3
UPF3A-210ENST00000493727 NTPCRQ9BSD7 190 aaKnown RBP13.19□□□□□ -0.3
UPF3A-210ENST00000493727 GBP3Q9H0R5 595 aa13.19□□□□□ -0.3
UPF3A-210ENST00000493727 ST6GALNAC4Q9H4F1 302 aa13.19□□□□□ -0.3
UPF3A-210ENST00000493727 TBX20Q9UMR3 447 aa13.19□□□□□ -0.3
UPF3A-210ENST00000493727 MTCL1Q9Y4B5 1905 aaKnown RBP13.19□□□□□ -0.3
UPF3A-210ENST00000493727 DOCK8Q8NF50 2099 aa13.18□□□□□ -0.3
UPF3A-210ENST00000493727 CALUO43852 315 aaPredicted RBP13.18□□□□□ -0.3
UPF3A-210ENST00000493727 ERCC5P28715 1186 aaPredicted RBP13.18□□□□□ -0.3
UPF3A-210ENST00000493727 HOXA11P31270 313 aaPredicted RBP13.18□□□□□ -0.3
UPF3A-210ENST00000493727 SLC11A1P49279 550 aa13.18□□□□□ -0.3
UPF3A-210ENST00000493727 ZNF165P49910 485 aa13.18□□□□□ -0.3
UPF3A-210ENST00000493727 PTENP60484 403 aa13.18□□□□□ -0.3
UPF3A-210ENST00000493727 GTF2BQ00403 316 aa13.18□□□□□ -0.3
UPF3A-210ENST00000493727 KNOP1Q1ED39 458 aaKnown RBP13.18□□□□□ -0.3
UPF3A-210ENST00000493727 WDR44Q5JSH3 913 aa13.18□□□□□ -0.3
UPF3A-210ENST00000493727 ATAT1Q5SQI0 421 aa13.18□□□□□ -0.3
UPF3A-210ENST00000493727 KIAA1841Q6NSI8 718 aa13.18□□□□□ -0.3
UPF3A-210ENST00000493727 NOTUMQ6P988 496 aa13.18□□□□□ -0.3
UPF3A-210ENST00000493727 HS2ST1Q7LGA3 356 aa13.18□□□□□ -0.3
UPF3A-210ENST00000493727 TMEM173Q86WV6 379 aaPredicted RBP13.18□□□□□ -0.3
UPF3A-210ENST00000493727 MAP4K3Q8IVH8 894 aa13.18□□□□□ -0.3
UPF3A-210ENST00000493727 NPAS3Q8IXF0 933 aa13.18□□□□□ -0.3
UPF3A-210ENST00000493727 ZNF295-AS1Q8N0V1 137 aa13.18□□□□□ -0.3
UPF3A-210ENST00000493727 ZNF507Q8TCN5 953 aa13.18□□□□□ -0.3
UPF3A-210ENST00000493727 FAM200AQ8TCP9 573 aa13.18□□□□□ -0.3
UPF3A-210ENST00000493727 EMILIN2Q9BXX0 1053 aa13.18□□□□□ -0.3
UPF3A-210ENST00000493727 NFKBIZQ9BYH8 718 aa13.18□□□□□ -0.3
UPF3A-210ENST00000493727 MINDY3Q9H8M7 445 aa13.18□□□□□ -0.3
UPF3A-210ENST00000493727 PRMT7Q9NVM4 692 aaPredicted RBP13.18□□□□□ -0.3
UPF3A-210ENST00000493727 RWDD2AQ9UIY3 292 aa13.18□□□□□ -0.3
UPF3A-210ENST00000493727 SSX2IPQ9Y2D8 614 aa13.18□□□□□ -0.3
UPF3A-210ENST00000493727 FAN1Q9Y2M0 1017 aa13.18□□□□□ -0.3
UPF3A-210ENST00000493727 USP3Q9Y6I4 520 aa13.18□□□□□ -0.3
UPF3A-210ENST00000493727 MEIS3P2A8K0S8 358 aa13.17□□□□□ -0.3
UPF3A-210ENST00000493727 SMTNL1A8MU46 457 aa13.17□□□□□ -0.3
UPF3A-210ENST00000493727 GOLGA6L19H0YKK7 550 aa13.17□□□□□ -0.3
UPF3A-210ENST00000493727 CDK2AP1O14519 115 aa13.17□□□□□ -0.3
UPF3A-210ENST00000493727 HNRNPDLO14979 420 aaKnown RBP13.17□□□□□ -0.3
UPF3A-210ENST00000493727 ASGR2P07307 311 aa13.17□□□□□ -0.3
UPF3A-210ENST00000493727 ITGA4P13612 1032 aa13.17□□□□□ -0.3
UPF3A-210ENST00000493727 CCNE1P24864 410 aa13.17□□□□□ -0.3
UPF3A-210ENST00000493727 MATR3P43243 847 aaKnown RBP eCLIP13.17□□□□□ -0.3
UPF3A-210ENST00000493727 LIG4P49917 911 aa13.17□□□□□ -0.3
UPF3A-210ENST00000493727 TPM4P67936 248 aa13.17□□□□□ -0.3
UPF3A-210ENST00000493727 MBTD1Q05BQ5 628 aa13.17□□□□□ -0.3
UPF3A-210ENST00000493727 RARS2Q5T160 578 aaKnown RBP13.17□□□□□ -0.3
UPF3A-210ENST00000493727 CWF19L1Q69YN2 538 aaKnown RBP13.17□□□□□ -0.3
UPF3A-210ENST00000493727 TMEM214Q6NUQ4 689 aaKnown RBP13.17□□□□□ -0.3
UPF3A-210ENST00000493727 ELMSAN1Q6PJG2 1045 aa13.17□□□□□ -0.3
UPF3A-210ENST00000493727 TAS1R3Q7RTX0 852 aa13.17□□□□□ -0.3
UPF3A-210ENST00000493727 ZDHHC14Q8IZN3 488 aa13.17□□□□□ -0.3
UPF3A-210ENST00000493727 AOPEPQ8N6M6 819 aa13.17□□□□□ -0.3
UPF3A-210ENST00000493727 RNF214Q8ND24 703 aa13.17□□□□□ -0.3
UPF3A-210ENST00000493727 GOLGA5Q8TBA6 731 aa13.17□□□□□ -0.3
UPF3A-210ENST00000493727 RHBDD1Q8TEB9 315 aa13.17□□□□□ -0.3
UPF3A-210ENST00000493727 MRPL4Q9BYD3 311 aaKnown RBP13.17□□□□□ -0.3
UPF3A-210ENST00000493727 SFXN1Q9H9B4 322 aa13.17□□□□□ -0.3
UPF3A-210ENST00000493727 DNAJB4Q9UDY4 337 aa13.17□□□□□ -0.3
UPF3A-210ENST00000493727 USTQ9Y2C2 406 aa13.17□□□□□ -0.3
UPF3A-210ENST00000493727 TRIM49BA6NDI0 452 aa13.16□□□□□ -0.3
UPF3A-210ENST00000493727 INPPL1O15357 1258 aa13.16□□□□□ -0.3
UPF3A-210ENST00000493727 URODP06132 367 aa13.16□□□□□ -0.3
UPF3A-210ENST00000493727 WEE2P0C1S8 567 aa13.16□□□□□ -0.3
UPF3A-210ENST00000493727 CLCN5P51795 746 aa13.16□□□□□ -0.3
UPF3A-210ENST00000493727 MYL5Q02045 173 aa13.16□□□□□ -0.3
UPF3A-210ENST00000493727 LRRC63Q05C16 580 aa13.16□□□□□ -0.3
UPF3A-210ENST00000493727 KCNA1Q09470 495 aa13.16□□□□□ -0.3
UPF3A-210ENST00000493727 PRPF4BQ13523 1007 aaKnown RBP13.16□□□□□ -0.3
UPF3A-210ENST00000493727 PTPN14Q15678 1187 aa13.16□□□□□ -0.3
UPF3A-210ENST00000493727 C4orf17Q53FE4 359 aa13.16□□□□□ -0.3
UPF3A-210ENST00000493727 UBXN11Q5T124 520 aa13.16□□□□□ -0.3
UPF3A-210ENST00000493727 ZNF280BQ86YH2 543 aa13.16□□□□□ -0.3
UPF3A-210ENST00000493727 ANKMY2Q8IV38 441 aa13.16□□□□□ -0.3
UPF3A-210ENST00000493727 TDRD5Q8NAT2 981 aaKnown RBP13.16□□□□□ -0.3
UPF3A-210ENST00000493727 FEZF2Q8TBJ5 459 aa13.16□□□□□ -0.3
UPF3A-210ENST00000493727 SLC22A17Q8WUG5 538 aa13.16□□□□□ -0.3
UPF3A-210ENST00000493727 AUTS2Q8WXX7 1259 aa13.16□□□□□ -0.3
UPF3A-210ENST00000493727 KCNN1Q92952 543 aa13.16□□□□□ -0.3
UPF3A-210ENST00000493727 BPIFA3Q9BQP9 254 aa13.16□□□□□ -0.3
UPF3A-210ENST00000493727 STRA6Q9BX79 667 aa13.16□□□□□ -0.3
UPF3A-210ENST00000493727 TRIM6Q9C030 488 aaPredicted RBP13.16□□□□□ -0.3
UPF3A-210ENST00000493727 CBX8Q9HC52 389 aa13.16□□□□□ -0.3
UPF3A-210ENST00000493727 MRPL17Q9NRX2 175 aaKnown RBP13.16□□□□□ -0.3
UPF3A-210ENST00000493727 SCHIP1Q9P0W5 487 aaPredicted RBP13.16□□□□□ -0.3
UPF3A-210ENST00000493727 DPP7Q9UHL4 492 aa13.16□□□□□ -0.3
UPF3A-210ENST00000493727 IPPQ9Y573 584 aa13.16□□□□□ -0.3
UPF3A-210ENST00000493727 FANCMQ8IYD8 2048 aa13.16□□□□□ -0.3
UPF3A-210ENST00000493727 NCOR2Q9Y618 2525 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms