RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 SFSWAPQ12872 951 aaKnown RBP12.32□□□□□ -0.44
HDAC4-210ENST00000493582 RASA3Q14644 834 aa12.32□□□□□ -0.44
HDAC4-210ENST00000493582 TRMT5Q32P41 509 aaKnown RBP12.32□□□□□ -0.44
HDAC4-210ENST00000493582 INTS5Q6P9B9 1019 aaKnown RBP12.32□□□□□ -0.44
HDAC4-210ENST00000493582 SLC51AQ86UW1 340 aa12.32□□□□□ -0.44
HDAC4-210ENST00000493582 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.32□□□□□ -0.44
HDAC4-210ENST00000493582 ETNPPLQ8TBG4 499 aa12.32□□□□□ -0.44
HDAC4-210ENST00000493582 TTC17Q96AE7 1141 aa12.32□□□□□ -0.44
HDAC4-210ENST00000493582 DGCR14Q96DF8 476 aaKnown RBP12.32□□□□□ -0.44
HDAC4-210ENST00000493582 PHF12Q96QT6 1004 aa12.32□□□□□ -0.44
HDAC4-210ENST00000493582 DCAF8L1A6NGE4 600 aa12.31□□□□□ -0.44
HDAC4-210ENST00000493582 EML1O00423 815 aa12.31□□□□□ -0.44
HDAC4-210ENST00000493582 TM7SF2O76062 418 aa12.31□□□□□ -0.44
HDAC4-210ENST00000493582 NT5C2P49902 561 aa12.31□□□□□ -0.44
HDAC4-210ENST00000493582 KLF1Q13351 362 aaPredicted RBP12.31□□□□□ -0.44
HDAC4-210ENST00000493582 MSLNQ13421 630 aaPredicted RBP12.31□□□□□ -0.44
HDAC4-210ENST00000493582 HNRNPDQ14103 355 aaKnown RBP12.31□□□□□ -0.44
HDAC4-210ENST00000493582 ASPRV1Q53RT3 343 aa12.31□□□□□ -0.44
HDAC4-210ENST00000493582 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.31□□□□□ -0.44
HDAC4-210ENST00000493582 P2RX7Q99572 595 aaKnown RBP12.31□□□□□ -0.44
HDAC4-210ENST00000493582 ANO3Q9BYT9 981 aa12.31□□□□□ -0.44
HDAC4-210ENST00000493582 VPS11Q9H270 941 aa12.31□□□□□ -0.44
HDAC4-210ENST00000493582 RANBP17Q9H2T7 1088 aaKnown RBP12.31□□□□□ -0.44
HDAC4-210ENST00000493582 DMAC2Q9NW81 257 aa12.31□□□□□ -0.44
HDAC4-210ENST00000493582 UVRAGQ9P2Y5 699 aa12.31□□□□□ -0.44
HDAC4-210ENST00000493582 PPARGC1AQ9UBK2 798 aaKnown RBP12.31□□□□□ -0.44
HDAC4-210ENST00000493582 SUPT3HO75486 399 aa12.31□□□□□ -0.44
HDAC4-210ENST00000493582 FUT4P22083 530 aa12.31□□□□□ -0.44
HDAC4-210ENST00000493582 ADARP55265 1226 aaKnown RBP12.31□□□□□ -0.44
HDAC4-210ENST00000493582 ASPHQ12797 758 aa12.31□□□□□ -0.44
HDAC4-210ENST00000493582 NCOA4Q13772 614 aa12.31□□□□□ -0.44
HDAC4-210ENST00000493582 TFDP1Q14186 410 aa12.31□□□□□ -0.44
HDAC4-210ENST00000493582 CCNG2Q16589 344 aa12.31□□□□□ -0.44
HDAC4-210ENST00000493582 MMEL1Q495T6 779 aa12.31□□□□□ -0.44
HDAC4-210ENST00000493582 MEX3CQ5U5Q3 659 aaKnown RBP12.31□□□□□ -0.44
HDAC4-210ENST00000493582 CCDC24Q8N4L8 307 aa12.31□□□□□ -0.44
HDAC4-210ENST00000493582 CYP2W1Q8TAV3 490 aa12.31□□□□□ -0.44
HDAC4-210ENST00000493582 MTMR4Q9NYA4 1195 aa12.31□□□□□ -0.44
HDAC4-210ENST00000493582 PLA2G4CQ9UP65 541 aa12.31□□□□□ -0.44
HDAC4-210ENST00000493582 SMIM31A0A1B0GVY4 71 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 UQCRBP14927 111 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 CD58P19256 250 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 GPS1Q13098 491 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 MTA1Q13330 715 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 PDK3Q15120 406 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 KAZNQ674X7 775 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 ZNF720Q7Z2F6 126 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 ZSWIM2Q8NEG5 633 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 KREMEN1Q96MU8 473 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 FAM111AQ96PZ2 611 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 TMEM117Q9H0C3 514 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 KLHL11Q9NVR0 708 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 FAM86B1E9PN63 330 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 ATP9BO43861 1147 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 FAM86B2P0C5J1 330 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 CDK4P11802 303 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 PEX2P28328 305 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 RGS2P41220 211 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 ARSEP51690 589 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 SH3BGRP55822 239 aaPredicted RBP12.3□□□□□ -0.44
HDAC4-210ENST00000493582 GEMIN4P57678 1058 aaKnown RBP12.3□□□□□ -0.44
HDAC4-210ENST00000493582 GPX6P59796 221 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 PLOD1Q02809 727 aaPredicted RBP12.3□□□□□ -0.44
HDAC4-210ENST00000493582 CENPCQ03188 943 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 GAD2Q05329 585 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 MAP7D3Q8IWC1 876 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 TPH2Q8IWU9 490 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 FAM178BQ8IXR5 827 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 FAM71AQ8IYT1 594 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 BANPQ8N9N5 519 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 HIPK4Q8NE63 616 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 CEP70Q8NHQ1 597 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 NAP1L4Q99733 375 aaKnown RBP12.3□□□□□ -0.44
HDAC4-210ENST00000493582 POLR3CQ9BUI4 534 aaPredicted RBP12.3□□□□□ -0.44
HDAC4-210ENST00000493582 YIPF2Q9BWQ6 316 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 ADAMTS6Q9UKP5 1117 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 ZNF148Q9UQR1 794 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 MEI4A8MW99 385 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 EIF3DO15371 548 aaKnown RBP eCLIP12.3□□□□□ -0.441e-6■■□□□ 13.9
HDAC4-210ENST00000493582 SORBS2O94875 1100 aaKnown RBP12.3□□□□□ -0.44
HDAC4-210ENST00000493582 KRT10P13645 584 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 CYP11B1P15538 503 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 CRKLP46109 303 aaKnown RBP12.3□□□□□ -0.44
HDAC4-210ENST00000493582 RPS8P62241 208 aaKnown RBP12.3□□□□□ -0.44
HDAC4-210ENST00000493582 MPP3Q13368 585 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 GRM2Q14416 872 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 PRKD1Q15139 912 aaPredicted RBP12.3□□□□□ -0.44
HDAC4-210ENST00000493582 HSF5Q4G112 596 aaPredicted RBP12.3□□□□□ -0.44
HDAC4-210ENST00000493582 KLC3Q6P597 504 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 KLHDC10Q6PID8 442 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 NLRX1Q86UT6 975 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 TAB3Q8N5C8 712 aaPredicted RBP12.3□□□□□ -0.44
HDAC4-210ENST00000493582 FAM172AQ8WUF8 416 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 USP6NLQ92738 828 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 FIZ1Q96SL8 496 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 EIF2AK1Q9BQI3 630 aaKnown RBP12.3□□□□□ -0.44
HDAC4-210ENST00000493582 SMYD3Q9H7B4 428 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 PARVGQ9HBI0 331 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 USP29Q9HBJ7 922 aa12.3□□□□□ -0.44
HDAC4-210ENST00000493582 PTTG2Q9NZH5 202 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms