RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 TMC3Q7Z5M5 1100 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 ZBTB33Q86T24 672 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 RHOT1Q8IXI2 618 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 FAM76AQ8TAV0 307 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 FNIP1Q8TF40 1166 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 AFG1LQ8WV93 481 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 TRAPPC12Q8WVT3 735 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 MAGOHBQ96A72 148 aaKnown RBP11.41□□□□□ -0.58
USP4-214ENST00000491791 FAM84AQ96KN4 292 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 GDAP1L1Q96MZ0 367 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 TMEM109Q9BVC6 243 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 INO80BQ9C086 356 aaPredicted RBP11.41□□□□□ -0.58
USP4-214ENST00000491791 NEUROG2Q9H2A3 272 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 PDZD7Q9H5P4 517 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 PLEKHA5Q9HAU0 1116 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.41□□□□□ -0.58
USP4-214ENST00000491791 SLC5A4Q9NY91 659 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 GOLGA6AQ9NYA3 693 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 IP6K2Q9UHH9 426 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 SIX4Q9UIU6 781 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 KIAA1257Q9ULG3 409 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 STRIP2Q9ULQ0 834 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 NR2E3Q9Y5X4 410 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 A6NJR5 290 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 HMGB1P1B2RPK0 211 aaPredicted RBP11.4□□□□□ -0.58
USP4-214ENST00000491791 H3BRB1 525 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 MEFVO15553 781 aaPredicted RBP11.4□□□□□ -0.58
USP4-214ENST00000491791 THAP12O43422 761 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 MED7O43513 233 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 ERLIN2O94905 339 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 MMP3P08254 477 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 CFHP08603 1231 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 NUDT17P0C025 328 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 STAG3L1P0CL83 205 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 CCL5P13501 91 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 ACTN2P35609 894 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 HSD17B3P37058 310 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 CLCN3P51790 818 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 COPS2P61201 443 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 ACVR2BQ13705 512 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 HLTFQ14527 1009 aaKnown RBP eCLIP11.4□□□□□ -0.58
USP4-214ENST00000491791 CCNG2Q16589 344 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 ZNF699Q32M78 642 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 AGBL2Q5U5Z8 902 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 TTC27Q6P3X3 843 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 DRICH1Q6PGQ1 229 aaPredicted RBP11.4□□□□□ -0.58
USP4-214ENST00000491791 ZDHHC24Q6UX98 284 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 APBB1IPQ7Z5R6 666 aaPredicted RBP11.4□□□□□ -0.58
USP4-214ENST00000491791 CROCCP2Q86T23 111 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 KIAA0319LQ8IZA0 1049 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 WDTC1Q8N5D0 677 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 ART4Q93070 314 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 BTBD6Q96KE9 485 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 NLRP4Q96MN2 994 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 RUFY1Q96T51 708 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 TSPYL1Q9H0U9 437 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 TUT1Q9H6E5 874 aaKnown RBP11.4□□□□□ -0.58
USP4-214ENST00000491791 TMBIM4Q9HC24 238 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 GRHL1Q9NZI5 618 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 WHRNQ9P202 907 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 EFR3BQ9Y2G0 817 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 Q9Y3F1 56 aa11.4□□□□□ -0.58
USP4-214ENST00000491791 MBLAC1A4D2B0 266 aaPredicted RBP11.39□□□□□ -0.59
USP4-214ENST00000491791 TMEM110-MUSTN1A8MSY1 372 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 LACTBL1A8MY62 500 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 B4GALT5O43286 388 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 SMPD1P17405 629 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 CTGFP29279 349 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 ADCYAP1R1P41586 468 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 GRM5P41594 1212 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 GABRB2P47870 512 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 GUCY2FP51841 1108 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 PRKCZQ05513 592 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 INCA1Q0VD86 236 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 PIGHQ14442 188 aaPredicted RBP11.39□□□□□ -0.59
USP4-214ENST00000491791 ACAP1Q15027 740 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 DGKDQ16760 1214 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 PTPROQ16827 1216 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 SLC10A6Q3KNW5 377 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 SEZ6Q53EL9 994 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 TTMPQ5BVD1 217 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 ZNF667Q5HYK9 610 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 MORN1Q5T089 497 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 WDR78Q5VTH9 848 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 CCDC137Q6PK04 289 aaKnown RBP11.39□□□□□ -0.59
USP4-214ENST00000491791 CHRDL2Q6WN34 429 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 KDM7AQ6ZMT4 941 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 RUFY4Q6ZNE9 571 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 POLNQ7Z5Q5 900 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 RCOR2Q8IZ40 523 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 C1orf127Q8N9H9 656 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 C3orf20Q8ND61 904 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 GRK7Q8WTQ7 553 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 RIN2Q8WYP3 895 aaPredicted RBP11.39□□□□□ -0.59
USP4-214ENST00000491791 ELMO3Q96BJ8 720 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 ATP6V1G3Q96LB4 118 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 FMO2Q99518 471 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 HINFPQ9BQA5 517 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 CELF4Q9BZC1 486 aaKnown RBP11.39□□□□□ -0.59
USP4-214ENST00000491791 WDR35Q9P2L0 1181 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms