RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 BBS7Q8IWZ6 715 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 BLOC1S5Q8TDH9 187 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 PRPF18Q99633 342 aaKnown RBP13.72□□□□□ -0.21
COL6A3-212ENST00000491769 THG1LQ9NWX6 298 aaKnown RBP13.72□□□□□ -0.21
COL6A3-212ENST00000491769 MTMR4Q9NYA4 1195 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 RAB23Q9ULC3 237 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 GSG1L2A8MUP6 293 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 CASP8Q14790 479 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 FRMD5Q7Z6J6 570 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 CALML6Q8TD86 181 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 ZMAT2Q96NC0 199 aaKnown RBP13.72□□□□□ -0.21
COL6A3-212ENST00000491769 AKAP7Q9P0M2 348 aaPredicted RBP13.72□□□□□ -0.21
COL6A3-212ENST00000491769 LIMA1Q9UHB6 759 aaKnown RBP13.72□□□□□ -0.21
COL6A3-212ENST00000491769 AXIN2Q9Y2T1 843 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 ITGB3P05106 788 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 SLC1A1P43005 524 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 ZNF284Q2VY69 593 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 EFHC1Q5JVL4 640 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 SLC44A2Q8IWA5 706 aaPredicted RBP13.72□□□□□ -0.21
COL6A3-212ENST00000491769 DHX40Q8IX18 779 aaKnown RBP13.72□□□□□ -0.21
COL6A3-212ENST00000491769 INPP5DQ92835 1189 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 PPP1R2P1Q96PQ5 205 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 GEMIN8Q9NWZ8 242 aaKnown RBP13.72□□□□□ -0.21
COL6A3-212ENST00000491769 DPP7Q9UHL4 492 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 TNS3Q68CZ2 1445 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 MYL2P10916 166 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 POU4F1Q01851 419 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 CNTN1Q12860 1018 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 MRPL28Q13084 256 aaKnown RBP13.72□□□□□ -0.21
COL6A3-212ENST00000491769 PDIA6Q15084 440 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 C12orf60Q5U649 245 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 TRIM65Q6PJ69 517 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 CLEC4FQ8N1N0 589 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 CAMKK1Q8N5S9 505 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 ICA1LQ8NDH6 482 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 VPS37AQ8NEZ2 397 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 TMEM117Q9H0C3 514 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 TBKBP1A7MCY6 615 aa13.71□□□□□ -0.21
COL6A3-212ENST00000491769 SERPINI2O75830 405 aa13.71□□□□□ -0.21
COL6A3-212ENST00000491769 IGKV5-2P06315 115 aa13.71□□□□□ -0.21
COL6A3-212ENST00000491769 RABGAP1LQ5R372 815 aa13.71□□□□□ -0.21
COL6A3-212ENST00000491769 EMBQ6PCB8 327 aa13.71□□□□□ -0.21
COL6A3-212ENST00000491769 RGL4Q8IZJ4 473 aa13.71□□□□□ -0.21
COL6A3-212ENST00000491769 METTL5Q9NRN9 209 aaKnown RBP13.71□□□□□ -0.21
COL6A3-212ENST00000491769 FGFR4P22455 802 aa13.71□□□□□ -0.21
COL6A3-212ENST00000491769 GRK3P35626 688 aa13.71□□□□□ -0.21
COL6A3-212ENST00000491769 PNPLA4P41247 253 aa13.71□□□□□ -0.21
COL6A3-212ENST00000491769 PDK1Q15118 436 aa13.71□□□□□ -0.21
COL6A3-212ENST00000491769 ZNF579Q8NAF0 562 aaKnown RBP13.71□□□□□ -0.21
COL6A3-212ENST00000491769 KRT35Q92764 455 aa13.71□□□□□ -0.21
COL6A3-212ENST00000491769 SKA1Q96BD8 255 aa13.71□□□□□ -0.21
COL6A3-212ENST00000491769 WDCPQ9H6R7 721 aa13.71□□□□□ -0.21
COL6A3-212ENST00000491769 DPP3Q9NY33 737 aa13.71□□□□□ -0.21
COL6A3-212ENST00000491769 ZC3H7BQ9UGR2 993 aaKnown RBP13.71□□□□□ -0.21
COL6A3-212ENST00000491769 CCDC85CA6NKD9 419 aa13.71□□□□□ -0.21
COL6A3-212ENST00000491769 RASSF9O75901 435 aa13.71□□□□□ -0.21
COL6A3-212ENST00000491769 SUPT20HL2P0C7V6 817 aa13.71□□□□□ -0.21
COL6A3-212ENST00000491769 CHI3L1P36222 383 aaPredicted RBP13.71□□□□□ -0.21
COL6A3-212ENST00000491769 ZNF543Q08ER8 600 aa13.71□□□□□ -0.21
COL6A3-212ENST00000491769 VPS72Q15906 364 aa13.71□□□□□ -0.21
COL6A3-212ENST00000491769 STYK1Q6J9G0 422 aa13.71□□□□□ -0.21
COL6A3-212ENST00000491769 TRIM69Q86WT6 500 aa13.71□□□□□ -0.21
COL6A3-212ENST00000491769 ARHGEF26Q96DR7 871 aa13.71□□□□□ -0.21
COL6A3-212ENST00000491769 TRPM5Q9NZQ8 1165 aa13.71□□□□□ -0.21
COL6A3-212ENST00000491769 PSMD12O00232 456 aaPredicted RBP13.71□□□□□ -0.22
COL6A3-212ENST00000491769 GPD1P21695 349 aa13.71□□□□□ -0.22
COL6A3-212ENST00000491769 TOMM20Q15388 145 aa13.71□□□□□ -0.22
COL6A3-212ENST00000491769 KIF21AQ7Z4S6 1674 aa13.71□□□□□ -0.22
COL6A3-212ENST00000491769 ZW10O43264 779 aa13.71□□□□□ -0.22
COL6A3-212ENST00000491769 FYNP06241 537 aa13.71□□□□□ -0.22
COL6A3-212ENST00000491769 CDH2P19022 906 aaPredicted RBP13.71□□□□□ -0.22
COL6A3-212ENST00000491769 NECTIN1Q15223 517 aa13.71□□□□□ -0.22
COL6A3-212ENST00000491769 C16orf62Q7Z3J2 963 aa13.71□□□□□ -0.22
COL6A3-212ENST00000491769 RFFLQ8WZ73 363 aa13.71□□□□□ -0.22
COL6A3-212ENST00000491769 C2orf81A6NN90 581 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 ADCY3O60266 1144 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 AP1G2O75843 785 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 PTPN7P35236 360 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 TTLL9Q3SXZ7 439 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 MMGT1Q8N4V1 131 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 KCNV2Q8TDN2 545 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 ADARB2Q9NS39 739 aaKnown RBP13.7□□□□□ -0.22
COL6A3-212ENST00000491769 SPATA31A6Q5VVP1 1343 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 GCC2Q8IWJ2 1684 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 GTF2E2P29084 291 aaKnown RBP13.7□□□□□ -0.22
COL6A3-212ENST00000491769 UGT3A1Q6NUS8 523 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 IL1RL2Q9HB29 575 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 TRMT6Q9UJA5 497 aaKnown RBP13.7□□□□□ -0.22
COL6A3-212ENST00000491769 TRIM17Q9Y577 477 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 VWA5AO00534 786 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 PMPCBO75439 489 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 SMTNL2Q2TAL5 461 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 CACUL1Q86Y37 369 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 HPS3Q969F9 1004 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 PCMTD2Q9NV79 361 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 ESYT3A0FGR9 886 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 CCDC22O60826 627 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 FGFR1P11362 822 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 HIRAP54198 1017 aaPredicted RBP13.7□□□□□ -0.22
COL6A3-212ENST00000491769 SGCGQ13326 291 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms