RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 TRAPPC11Q7Z392 1133 aa19.52■□□□□ 0.72
COL9A3-214ENST00000490398 WDR49Q8IV35 697 aa19.52■□□□□ 0.72
COL9A3-214ENST00000490398 LRRC52Q8N7C0 313 aa19.52■□□□□ 0.72
COL9A3-214ENST00000490398 FGF13Q92913 245 aa19.52■□□□□ 0.72
COL9A3-214ENST00000490398 ANKRD36BP1Q96IX9 119 aa19.52■□□□□ 0.72
COL9A3-214ENST00000490398 ZNF560Q96MR9 790 aa19.52■□□□□ 0.72
COL9A3-214ENST00000490398 CGRRF1Q99675 332 aa19.52■□□□□ 0.72
COL9A3-214ENST00000490398 CORO1BQ9BR76 489 aa19.52■□□□□ 0.72
COL9A3-214ENST00000490398 ZCWPW1Q9H0M4 648 aa19.52■□□□□ 0.72
COL9A3-214ENST00000490398 DNAJC25Q9H1X3 360 aa19.52■□□□□ 0.72
COL9A3-214ENST00000490398 TNNC2P02585 160 aa19.51■□□□□ 0.71
COL9A3-214ENST00000490398 CEBPBP17676 345 aa19.51■□□□□ 0.71
COL9A3-214ENST00000490398 ACAT1P24752 427 aaKnown RBP19.51■□□□□ 0.71
COL9A3-214ENST00000490398 SIGLEC14Q08ET2 396 aa19.51■□□□□ 0.71
COL9A3-214ENST00000490398 SURF1Q15526 300 aa19.51■□□□□ 0.71
COL9A3-214ENST00000490398 RTL10Q7L3V2 364 aa19.51■□□□□ 0.71
COL9A3-214ENST00000490398 ELMO3Q96BJ8 720 aa19.51■□□□□ 0.71
COL9A3-214ENST00000490398 OXCT2Q9BYC2 517 aaPredicted RBP19.51■□□□□ 0.71
COL9A3-214ENST00000490398 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.51■□□□□ 0.71
COL9A3-214ENST00000490398 CGNQ9P2M7 1197 aaKnown RBP19.51■□□□□ 0.71
COL9A3-214ENST00000490398 CDH7Q9ULB5 785 aa19.51■□□□□ 0.71
COL9A3-214ENST00000490398 SNX9Q9Y5X1 595 aa19.51■□□□□ 0.71
COL9A3-214ENST00000490398 DOCK8Q8NF50 2099 aa19.51■□□□□ 0.71
COL9A3-214ENST00000490398 MYO10Q9HD67 2058 aa19.51■□□□□ 0.71
COL9A3-214ENST00000490398 GOLGA6L4A6NEF3 574 aa19.5■□□□□ 0.71
COL9A3-214ENST00000490398 LRRIQ3A6PVS8 624 aaPredicted RBP19.5■□□□□ 0.71
COL9A3-214ENST00000490398 PDXKO00764 312 aa19.5■□□□□ 0.71
COL9A3-214ENST00000490398 MOSPD3O75425 235 aa19.5■□□□□ 0.71
COL9A3-214ENST00000490398 NR3C1P04150 777 aa19.5■□□□□ 0.71
COL9A3-214ENST00000490398 GJA1P17302 382 aa19.5■□□□□ 0.71
COL9A3-214ENST00000490398 PTPN2P17706 415 aa19.5■□□□□ 0.71
COL9A3-214ENST00000490398 TNNI1P19237 187 aa19.5■□□□□ 0.71
COL9A3-214ENST00000490398 PNPLA4P41247 253 aa19.5■□□□□ 0.71
COL9A3-214ENST00000490398 DLG4P78352 724 aa19.5■□□□□ 0.71
COL9A3-214ENST00000490398 MTMR3Q13615 1198 aa19.5■□□□□ 0.71
COL9A3-214ENST00000490398 HTR4Q13639 388 aa19.5■□□□□ 0.71
COL9A3-214ENST00000490398 KCNB1Q14721 858 aa19.5■□□□□ 0.71
COL9A3-214ENST00000490398 SOWAHAQ2M3V2 549 aa19.5■□□□□ 0.71
COL9A3-214ENST00000490398 PRSS36Q5K4E3 855 aa19.5■□□□□ 0.71
COL9A3-214ENST00000490398 PARM1Q6UWI2 310 aa19.5■□□□□ 0.71
COL9A3-214ENST00000490398 METTL23Q86XA0 190 aa19.5■□□□□ 0.71
COL9A3-214ENST00000490398 NPAS3Q8IXF0 933 aa19.5■□□□□ 0.71
COL9A3-214ENST00000490398 FGF14Q92915 247 aa19.5■□□□□ 0.71
COL9A3-214ENST00000490398 HPDLQ96IR7 371 aa19.5■□□□□ 0.71
COL9A3-214ENST00000490398 GDAP2Q9NXN4 497 aa19.5■□□□□ 0.71
COL9A3-214ENST00000490398 DSEQ9UL01 958 aa19.5■□□□□ 0.71
COL9A3-214ENST00000490398 MRPS23Q9Y3D9 190 aaKnown RBP19.5■□□□□ 0.71
COL9A3-214ENST00000490398 NUMBLQ9Y6R0 609 aa19.5■□□□□ 0.71
COL9A3-214ENST00000490398 ANHXE9PGG2 379 aa19.49■□□□□ 0.71
COL9A3-214ENST00000490398 FAM160A1Q05DH4 1040 aa19.49■□□□□ 0.71
COL9A3-214ENST00000490398 TDGQ13569 410 aa19.49■□□□□ 0.71
COL9A3-214ENST00000490398 LIMS2Q7Z4I7 341 aa19.49■□□□□ 0.71
COL9A3-214ENST00000490398 SLC9A9Q8IVB4 645 aa19.49■□□□□ 0.71
COL9A3-214ENST00000490398 THEM5Q8N1Q8 247 aa19.49■□□□□ 0.71
COL9A3-214ENST00000490398 SLC44A3Q8N4M1 653 aa19.49■□□□□ 0.71
COL9A3-214ENST00000490398 GOLGA5Q8TBA6 731 aa19.49■□□□□ 0.71
COL9A3-214ENST00000490398 KBTBD7Q8WVZ9 684 aa19.49■□□□□ 0.71
COL9A3-214ENST00000490398 MCRS1Q96EZ8 462 aa19.49■□□□□ 0.71
COL9A3-214ENST00000490398 FNBP1Q96RU3 617 aa19.49■□□□□ 0.71
COL9A3-214ENST00000490398 LRRC3Q9BY71 257 aa19.49■□□□□ 0.71
COL9A3-214ENST00000490398 CIZ1Q9ULV3 898 aaPredicted RBP19.49■□□□□ 0.71
COL9A3-214ENST00000490398 NME7Q9Y5B8 376 aa19.49■□□□□ 0.71
COL9A3-214ENST00000490398 HUS1O60921 280 aa19.48■□□□□ 0.71
COL9A3-214ENST00000490398 C1orf220Q5T0J3 134 aa19.48■□□□□ 0.71
COL9A3-214ENST00000490398 TMC8Q8IU68 726 aa19.48■□□□□ 0.71
COL9A3-214ENST00000490398 UBALD2Q8IYN6 164 aa19.48■□□□□ 0.71
COL9A3-214ENST00000490398 GUF1Q8N442 669 aaKnown RBP19.48■□□□□ 0.71
COL9A3-214ENST00000490398 PARD3BQ8TEW8 1205 aa19.48■□□□□ 0.71
COL9A3-214ENST00000490398 TMEM174Q8WUU8 243 aa19.48■□□□□ 0.71
COL9A3-214ENST00000490398 PBXIP1Q96AQ6 731 aa19.48■□□□□ 0.71
COL9A3-214ENST00000490398 PKMYT1Q99640 499 aa19.48■□□□□ 0.71
COL9A3-214ENST00000490398 ZNF334Q9HCZ1 680 aaPredicted RBP19.48■□□□□ 0.71
COL9A3-214ENST00000490398 AVENQ9NQS1 362 aaPredicted RBP19.48■□□□□ 0.71
COL9A3-214ENST00000490398 DDX43Q9NXZ2 648 aaKnown RBP19.48■□□□□ 0.71
COL9A3-214ENST00000490398 IGSF9Q9P2J2 1179 aa19.48■□□□□ 0.71
COL9A3-214ENST00000490398 MAFFQ9ULX9 164 aa19.48■□□□□ 0.71
COL9A3-214ENST00000490398 TRAF3IP3Q9Y228 551 aa19.48■□□□□ 0.71
COL9A3-214ENST00000490398 ATF6P18850 670 aa19.47■□□□□ 0.71
COL9A3-214ENST00000490398 LMO2P25791 158 aa19.47■□□□□ 0.71
COL9A3-214ENST00000490398 GPR15P49685 360 aa19.47■□□□□ 0.71
COL9A3-214ENST00000490398 MYL6P60660 151 aa19.47■□□□□ 0.71
COL9A3-214ENST00000490398 ZCWPW2Q504Y3 356 aa19.47■□□□□ 0.71
COL9A3-214ENST00000490398 TDRD10Q5VZ19 366 aaKnown RBP19.47■□□□□ 0.71
COL9A3-214ENST00000490398 CEP135Q66GS9 1140 aa19.47■□□□□ 0.71
COL9A3-214ENST00000490398 BMP8AQ7Z5Y6 402 aa19.47■□□□□ 0.71
COL9A3-214ENST00000490398 ADGRF2Q8IZF7 708 aa19.47■□□□□ 0.71
COL9A3-214ENST00000490398 TOP6BLQ8N6T0 577 aa19.47■□□□□ 0.71
COL9A3-214ENST00000490398 CCDC47Q96A33 483 aaKnown RBP19.47■□□□□ 0.71
COL9A3-214ENST00000490398 ZNF512Q96ME7 567 aaPredicted RBP19.47■□□□□ 0.71
COL9A3-214ENST00000490398 ZSWIM3Q96MP5 696 aa19.47■□□□□ 0.71
COL9A3-214ENST00000490398 LPIN3Q9BQK8 851 aa19.47■□□□□ 0.71
COL9A3-214ENST00000490398 XYLT2Q9H1B5 865 aa19.47■□□□□ 0.71
COL9A3-214ENST00000490398 DUSP12Q9UNI6 340 aa19.47■□□□□ 0.71
COL9A3-214ENST00000490398 PCDHA5Q9Y5H7 936 aa19.47■□□□□ 0.71
COL9A3-214ENST00000490398 GABRDO14764 452 aa19.46■□□□□ 0.71
COL9A3-214ENST00000490398 ATP2C2O75185 946 aa19.46■□□□□ 0.71
COL9A3-214ENST00000490398 AKAP3O75969 853 aa19.46■□□□□ 0.71
COL9A3-214ENST00000490398 VNN1O95497 513 aa19.46■□□□□ 0.71
COL9A3-214ENST00000490398 C4BPAP04003 597 aaKnown RBP19.46■□□□□ 0.71
COL9A3-214ENST00000490398 MYL4P12829 197 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms