RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 UBR7Q8N806 425 aa14.84□□□□□ -0.03
C9orf3-221ENST00000489562 KLHL23Q8NBE8 558 aa14.84□□□□□ -0.03
C9orf3-221ENST00000489562 KAT5Q92993 513 aa14.84□□□□□ -0.03
C9orf3-221ENST00000489562 ELMO3Q96BJ8 720 aa14.84□□□□□ -0.03
C9orf3-221ENST00000489562 ARID3AQ99856 593 aa14.84□□□□□ -0.03
C9orf3-221ENST00000489562 TTPALQ9BTX7 342 aa14.84□□□□□ -0.03
C9orf3-221ENST00000489562 NKX2-4Q9H2Z4 354 aa14.84□□□□□ -0.03
C9orf3-221ENST00000489562 SNX25Q9H3E2 840 aa14.84□□□□□ -0.03
C9orf3-221ENST00000489562 NLRC4Q9NPP4 1024 aa14.84□□□□□ -0.03
C9orf3-221ENST00000489562 CISHQ9NSE2 258 aa14.84□□□□□ -0.03
C9orf3-221ENST00000489562 BARX2Q9UMQ3 279 aaPredicted RBP14.84□□□□□ -0.03
C9orf3-221ENST00000489562 CNTN6Q9UQ52 1028 aa14.84□□□□□ -0.03
C9orf3-221ENST00000489562 SSX2IPQ9Y2D8 614 aa14.84□□□□□ -0.03
C9orf3-221ENST00000489562 MYH10P35580 1976 aa14.84□□□□□ -0.03
C9orf3-221ENST00000489562 MYO9BQ13459 2157 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 F8VZ95 297 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 H7C4K7 107 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 I3L4J1 428 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 GABRDO14764 452 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 CILPO75339 1184 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 OAZ2O95190 189 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 CCDC172P0C7W6 258 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 CD58P19256 250 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 ACO1P21399 889 aaKnown RBP14.83□□□□□ -0.04
C9orf3-221ENST00000489562 DNAJB2P25686 324 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 PCSK1P29120 753 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 TKTP29401 623 aaKnown RBP14.83□□□□□ -0.04
C9orf3-221ENST00000489562 PBX2P40425 430 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 STAT1P42224 750 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 GLUD2P49448 558 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 YWHAHQ04917 246 aaPredicted RBP14.83□□□□□ -0.04
C9orf3-221ENST00000489562 TBX2Q13207 712 aaPredicted RBP14.83□□□□□ -0.04
C9orf3-221ENST00000489562 WSCD1Q658N2 575 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 OVOS1Q6IE37 1185 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 ZNF280DQ6N043 979 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 KIAA1841Q6NSI8 718 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 ANKS3Q6ZW76 656 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 THEM5Q8N1Q8 247 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 OR6B3Q8NGW1 331 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 KBTBD7Q8WVZ9 684 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 BAP1Q92560 729 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 C17orf80Q9BSJ5 609 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 SDCBP2Q9H190 292 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 PCDHB4Q9Y5E5 795 aa14.83□□□□□ -0.04
C9orf3-221ENST00000489562 URODP06132 367 aa14.82□□□□□ -0.04
C9orf3-221ENST00000489562 CASP14P31944 242 aa14.82□□□□□ -0.04
C9orf3-221ENST00000489562 SOX5P35711 763 aa14.82□□□□□ -0.04
C9orf3-221ENST00000489562 GNL1P36915 607 aaPredicted RBP14.82□□□□□ -0.04
C9orf3-221ENST00000489562 RAP1GAPP47736 663 aa14.82□□□□□ -0.04
C9orf3-221ENST00000489562 CDH8P55286 799 aa14.82□□□□□ -0.04
C9orf3-221ENST00000489562 BPIFB4P59827 614 aa14.82□□□□□ -0.04
C9orf3-221ENST00000489562 DSG1Q02413 1049 aa14.82□□□□□ -0.04
C9orf3-221ENST00000489562 CREMQ03060 361 aa14.82□□□□□ -0.04
C9orf3-221ENST00000489562 VARS2Q5ST30 1063 aaKnown RBP14.82□□□□□ -0.04
C9orf3-221ENST00000489562 TMEM270Q6UE05 265 aa14.82□□□□□ -0.04
C9orf3-221ENST00000489562 FAM71AQ8IYT1 594 aa14.82□□□□□ -0.04
C9orf3-221ENST00000489562 FBXO22Q8NEZ5 403 aa14.82□□□□□ -0.04
C9orf3-221ENST00000489562 PIK3R5Q8WYR1 880 aa14.82□□□□□ -0.04
C9orf3-221ENST00000489562 SYN2Q92777 582 aaPredicted RBP14.82□□□□□ -0.04
C9orf3-221ENST00000489562 TIFAQ96CG3 184 aa14.82□□□□□ -0.04
C9orf3-221ENST00000489562 TNIP3Q96KP6 325 aa14.82□□□□□ -0.04
C9orf3-221ENST00000489562 MRPL45Q9BRJ2 306 aaKnown RBP14.82□□□□□ -0.04
C9orf3-221ENST00000489562 VN1R3Q9BXE9 311 aa14.82□□□□□ -0.04
C9orf3-221ENST00000489562 NT5C1AQ9BXI3 368 aa14.82□□□□□ -0.04
C9orf3-221ENST00000489562 CHST7Q9NS84 486 aa14.82□□□□□ -0.04
C9orf3-221ENST00000489562 DDX43Q9NXZ2 648 aaKnown RBP14.82□□□□□ -0.04
C9orf3-221ENST00000489562 AJAP1Q9UKB5 411 aaPredicted RBP14.82□□□□□ -0.04
C9orf3-221ENST00000489562 STXBP5LQ9Y2K9 1186 aa14.82□□□□□ -0.04
C9orf3-221ENST00000489562 TMEM265A0A087WTH1 108 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 OR6C75A6NL08 312 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 A8MXQ7 604 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 AKR1B15C9JRZ8 316 aaPredicted RBP14.81□□□□□ -0.04
C9orf3-221ENST00000489562 H3BNC9 293 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 FOXN3O00409 490 aaPredicted RBP14.81□□□□□ -0.04
C9orf3-221ENST00000489562 ARHGEF15O94989 841 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 PAEPP09466 180 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 KRT5P13647 590 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 FERP16591 822 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 KRT9P35527 623 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 USP8P40818 1118 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 FXR1P51114 621 aaKnown RBP eCLIP14.81□□□□□ -0.04
C9orf3-221ENST00000489562 NDST1P52848 882 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 GSDMDP57764 484 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 MRPL58Q14197 206 aaKnown RBP14.81□□□□□ -0.04
C9orf3-221ENST00000489562 ARID5BQ14865 1188 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 TSR1Q2NL82 804 aaKnown RBP14.81□□□□□ -0.04
C9orf3-221ENST00000489562 SFMBT2Q5VUG0 894 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 PDE12Q6L8Q7 609 aaKnown RBP14.81□□□□□ -0.04
C9orf3-221ENST00000489562 CEP57Q86XR8 500 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 VPS52Q8N1B4 723 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 RBBP8NLQ8NC74 664 aaPredicted RBP14.81□□□□□ -0.04
C9orf3-221ENST00000489562 OR8K1Q8NGG5 319 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 CPLX3Q8WVH0 158 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 ACBD6Q9BR61 282 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 GPR88Q9GZN0 384 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 ZBP1Q9H171 429 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.81□□□□□ -0.04
C9orf3-221ENST00000489562 CDH9Q9ULB4 789 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 KIAA1257Q9ULG3 409 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 COLQQ9Y215 455 aaPredicted RBP14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms