RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 SPATA5Q8NB90 893 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 GIMAP8Q8ND71 665 aaPredicted RBP4.8□□□□□ -1.64
PTCD3-216ENST00000487043 OR14K1Q8NGZ2 314 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 KBTBD7Q8WVZ9 684 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 LPPQ93052 612 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 TRIM63Q969Q1 353 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 CEP95Q96GE4 821 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 TMEM41AQ96HV5 264 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 AJUBAQ96IF1 538 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 YTHDC1Q96MU7 727 aaKnown RBP4.8□□□□□ -1.64
PTCD3-216ENST00000487043 MYOCQ99972 504 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 BRIP1Q9BX63 1249 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 TRIM54Q9BYV2 358 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 MAF1Q9H063 256 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 TMEM168Q9H0V1 697 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 OR10A2Q9H208 303 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 COL20A1Q9P218 1284 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 SRRDQ9UH36 339 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 PNMA2Q9UL42 364 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 DGKBQ9Y6T7 804 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 AGLP35573 1532 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 MROH1Q8NDA8 1641 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 RNF17Q9BXT8 1623 aaKnown RBP4.79□□□□□ -1.64
PTCD3-216ENST00000487043 PRDM15P57071 1507 aaPredicted RBP4.79□□□□□ -1.64
PTCD3-216ENST00000487043 LMTK2Q8IWU2 1503 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 TCRBV7S2A1N4TA0A589 114 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 BTN3A1O00481 513 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 NRP1O14786 923 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 KIAA0391O15091 583 aaKnown RBP4.79□□□□□ -1.64
PTCD3-216ENST00000487043 MTSS1O43312 755 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 MATN4O95460 622 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 ALOX15P16050 662 aaPredicted RBP4.79□□□□□ -1.64
PTCD3-216ENST00000487043 CSF2RBP32927 897 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 GRK6P43250 576 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 SARSP49591 514 aaKnown RBP4.79□□□□□ -1.64
PTCD3-216ENST00000487043 ADCY7P51828 1080 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 APBA1Q02410 837 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 SLC13A2Q13183 592 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 GRM1Q13255 1194 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 BLMHQ13867 455 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 PUM3Q15397 648 aaKnown RBP4.79□□□□□ -1.64
PTCD3-216ENST00000487043 TBR1Q16650 682 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 ZNF827Q17R98 1081 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 MPEG1Q2M385 716 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 SLC35G1Q2M3R5 365 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 PABPC1LQ4VXU2 614 aaKnown RBP4.79□□□□□ -1.64
PTCD3-216ENST00000487043 MFSD14BQ5SR56 506 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 DACT2Q5SW24 774 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 MCTP2Q6DN12 878 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 ZNF783Q6ZMS7 281 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 USP30Q70CQ3 517 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 CMTM4Q8IZR5 234 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 ATP11CQ8NB49 1132 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 ATXN2LQ8WWM7 1075 aaKnown RBP4.79□□□□□ -1.64
PTCD3-216ENST00000487043 ZNF566Q969W8 418 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 NMD3Q96D46 503 aaKnown RBP4.79□□□□□ -1.64
PTCD3-216ENST00000487043 ZC3H10Q96K80 434 aaKnown RBP4.79□□□□□ -1.64
PTCD3-216ENST00000487043 MSLNLQ96KJ4 702 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 COLEC11Q9BWP8 271 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 TTLL2Q9BWV7 592 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 SLC6A15Q9H2J7 730 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 BARX1Q9HBU1 254 aaPredicted RBP4.79□□□□□ -1.64
PTCD3-216ENST00000487043 SIDT1Q9NXL6 827 aaKnown RBP4.79□□□□□ -1.64
PTCD3-216ENST00000487043 GTF2A1LQ9UNN4 478 aa4.79□□□□□ -1.64
PTCD3-216ENST00000487043 RPRD2Q5VT52 1461 aaKnown RBP4.79□□□□□ -1.64
PTCD3-216ENST00000487043 ATRNL1Q5VV63 1379 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 TONSLQ96HA7 1378 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 TET3O43151 1660 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 PLA2R1Q13018 1463 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 A0A1W2PPC4 97 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 FFAR2O15552 330 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 MTHFD1P11586 935 aaKnown RBP4.78□□□□□ -1.64
PTCD3-216ENST00000487043 INSRRP14616 1297 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 ATP5JP18859 108 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 FGFR2P21802 821 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 EEF1GP26641 437 aaKnown RBP4.78□□□□□ -1.64
PTCD3-216ENST00000487043 ARFIP2P53365 341 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 PTH1RQ03431 593 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 HABP2Q14520 560 aaPredicted RBP4.78□□□□□ -1.64
PTCD3-216ENST00000487043 ZMAT1Q5H9K5 638 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 FAM47AQ5JRC9 791 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 UBXN11Q5T124 520 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 EMC10Q5UCC4 262 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 TLDC1Q6P9B6 456 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 MPP5Q8N3R9 675 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 TP53I13Q8NBR0 393 aaPredicted RBP4.78□□□□□ -1.64
PTCD3-216ENST00000487043 OR10H5Q8NGA6 315 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 MAML1Q92585 1016 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 IQCDQ96DY2 449 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 SNX22Q96L94 193 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 MRI1Q9BV20 369 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 PACSIN1Q9BY11 444 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 MYLK2Q9H1R3 596 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 BRD9Q9H8M2 597 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 CASS4Q9NQ75 786 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.78□□□□□ -1.64
PTCD3-216ENST00000487043 USP40Q9NVE5 1235 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 NTMQ9P121 344 aa4.78□□□□□ -1.64
PTCD3-216ENST00000487043 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.78□□□□□ -1.64
PTCD3-216ENST00000487043 SLC23A1Q9UHI7 598 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms