RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 GNL1P36915 607 aaPredicted RBP13.08□□□□□ -0.32
SDC1-206ENST00000482879 LHX1P48742 406 aa13.08□□□□□ -0.32
SDC1-206ENST00000482879 YWHAHQ04917 246 aaPredicted RBP13.08□□□□□ -0.32
SDC1-206ENST00000482879 GPM6BQ13491 265 aa13.08□□□□□ -0.32
SDC1-206ENST00000482879 DRAP1Q14919 205 aaPredicted RBP13.08□□□□□ -0.32
SDC1-206ENST00000482879 FIGNQ5HY92 759 aa13.08□□□□□ -0.32
SDC1-206ENST00000482879 VARS2Q5ST30 1063 aaKnown RBP13.08□□□□□ -0.32
SDC1-206ENST00000482879 OVOS1Q6IE37 1185 aa13.08□□□□□ -0.32
SDC1-206ENST00000482879 PPFIBP1Q86W92 1011 aa13.08□□□□□ -0.32
SDC1-206ENST00000482879 OSTM1Q86WC4 334 aa13.08□□□□□ -0.32
SDC1-206ENST00000482879 RNF168Q8IYW5 571 aaPredicted RBP13.08□□□□□ -0.32
SDC1-206ENST00000482879 THEM5Q8N1Q8 247 aa13.08□□□□□ -0.32
SDC1-206ENST00000482879 TTC39CQ8N584 583 aa13.08□□□□□ -0.32
SDC1-206ENST00000482879 SPATA18Q8TC71 538 aa13.08□□□□□ -0.32
SDC1-206ENST00000482879 SPPL3Q8TCT6 385 aa13.08□□□□□ -0.32
SDC1-206ENST00000482879 KBTBD7Q8WVZ9 684 aa13.08□□□□□ -0.32
SDC1-206ENST00000482879 ARNTL2Q8WYA1 636 aa13.08□□□□□ -0.32
SDC1-206ENST00000482879 JAKMIP2Q96AA8 810 aa13.08□□□□□ -0.32
SDC1-206ENST00000482879 IQCDQ96DY2 449 aa13.08□□□□□ -0.32
SDC1-206ENST00000482879 SPAG5Q96R06 1193 aa13.08□□□□□ -0.32
SDC1-206ENST00000482879 NAA15Q9BXJ9 866 aaKnown RBP13.08□□□□□ -0.32
SDC1-206ENST00000482879 EDEM3Q9BZQ6 932 aa13.08□□□□□ -0.32
SDC1-206ENST00000482879 BARX2Q9UMQ3 279 aaPredicted RBP13.08□□□□□ -0.32
SDC1-206ENST00000482879 LZTS1Q9Y250 596 aa13.08□□□□□ -0.32
SDC1-206ENST00000482879 PCDHB4Q9Y5E5 795 aa13.08□□□□□ -0.32
SDC1-206ENST00000482879 A8MXQ7 604 aa13.07□□□□□ -0.32
SDC1-206ENST00000482879 H3BNC9 293 aa13.07□□□□□ -0.32
SDC1-206ENST00000482879 FOXN3O00409 490 aaPredicted RBP13.07□□□□□ -0.32
SDC1-206ENST00000482879 GABRDO14764 452 aa13.07□□□□□ -0.32
SDC1-206ENST00000482879 OAZ2O95190 189 aa13.07□□□□□ -0.32
SDC1-206ENST00000482879 TPM1P09493 284 aa13.07□□□□□ -0.32
SDC1-206ENST00000482879 PDGFRBP09619 1106 aa13.07□□□□□ -0.32
SDC1-206ENST00000482879 KRT5P13647 590 aa13.07□□□□□ -0.32
SDC1-206ENST00000482879 ACO1P21399 889 aaKnown RBP13.07□□□□□ -0.32
SDC1-206ENST00000482879 USP8P40818 1118 aa13.07□□□□□ -0.32
SDC1-206ENST00000482879 GLUD2P49448 558 aa13.07□□□□□ -0.32
SDC1-206ENST00000482879 NDST1P52848 882 aa13.07□□□□□ -0.32
SDC1-206ENST00000482879 UBE3AQ05086 875 aa13.07□□□□□ -0.32
SDC1-206ENST00000482879 INCA1Q0VD86 236 aa13.07□□□□□ -0.32
SDC1-206ENST00000482879 TRIM14Q14142 442 aa13.07□□□□□ -0.32
SDC1-206ENST00000482879 RTP2Q5QGT7 225 aa13.07□□□□□ -0.32
SDC1-206ENST00000482879 ANKS3Q6ZW76 656 aa13.07□□□□□ -0.32
SDC1-206ENST00000482879 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.07□□□□□ -0.32
SDC1-206ENST00000482879 UBR7Q8N806 425 aa13.07□□□□□ -0.32
SDC1-206ENST00000482879 POF1BQ8WVV4 589 aa13.07□□□□□ -0.32
SDC1-206ENST00000482879 RIN2Q8WYP3 895 aaPredicted RBP13.07□□□□□ -0.32
SDC1-206ENST00000482879 SHC3Q92529 594 aa13.07□□□□□ -0.32
SDC1-206ENST00000482879 ANP32BQ92688 251 aaKnown RBP13.07□□□□□ -0.32
SDC1-206ENST00000482879 TTYH3Q9C0H2 523 aa13.07□□□□□ -0.32
SDC1-206ENST00000482879 FAM124BQ9H5Z6 455 aaPredicted RBP13.07□□□□□ -0.32
SDC1-206ENST00000482879 CHST7Q9NS84 486 aa13.07□□□□□ -0.32
SDC1-206ENST00000482879 DDX43Q9NXZ2 648 aaKnown RBP13.07□□□□□ -0.32
SDC1-206ENST00000482879 A0A1W2PQJ5 194 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 H7C4K7 107 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 RNF225M0QZC1 329 aaPredicted RBP13.06□□□□□ -0.32
SDC1-206ENST00000482879 C2CD2LO14523 706 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 GRM6O15303 877 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 CILPO75339 1184 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 CXCL14O95715 111 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 GYPCP04921 128 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 URODP06132 367 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 CTSAP10619 480 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 LMO2P25791 158 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 CASP14P31944 242 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 STAT1P42224 750 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 JAM2P57087 298 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 DSG1Q02413 1049 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 MRPL58Q14197 206 aaKnown RBP13.06□□□□□ -0.32
SDC1-206ENST00000482879 BMS1Q14692 1282 aaKnown RBP13.06□□□□□ -0.32
SDC1-206ENST00000482879 CTXN3Q4LDR2 81 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 ZNF394Q53GI3 561 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 KIAA0319Q5VV43 1072 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 PDXDC1Q6P996 788 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 TMEM270Q6UE05 265 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 PRSS55Q6UWB4 352 aaPredicted RBP13.06□□□□□ -0.32
SDC1-206ENST00000482879 TMC7Q7Z402 723 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 UNC93AQ86WB7 457 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 SPC24Q8NBT2 197 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 ZNF397Q8NF99 534 aaPredicted RBP13.06□□□□□ -0.32
SDC1-206ENST00000482879 LNX1Q8TBB1 728 aaPredicted RBP13.06□□□□□ -0.32
SDC1-206ENST00000482879 WHAMMQ8TF30 809 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 PIK3R5Q8WYR1 880 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 BAP1Q92560 729 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 NT5C1AQ9BXI3 368 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 ZBP1Q9H171 429 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 MRPL17Q9NRX2 175 aaKnown RBP13.06□□□□□ -0.32
SDC1-206ENST00000482879 CAPN11Q9UMQ6 739 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 STXBP5LQ9Y2K9 1186 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 LUC7L2Q9Y383 392 aaKnown RBP13.06□□□□□ -0.32
SDC1-206ENST00000482879 NME7Q9Y5B8 376 aa13.06□□□□□ -0.32
SDC1-206ENST00000482879 LAMA2P24043 3122 aaKnown RBP13.06□□□□□ -0.32
SDC1-206ENST00000482879 F8VZ95 297 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 HCRTO43612 131 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 CSPG5O95196 566 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 PNMA6AP0CW24 399 aaPredicted RBP13.05□□□□□ -0.32
SDC1-206ENST00000482879 ACAT1P24752 427 aaKnown RBP13.05□□□□□ -0.32
SDC1-206ENST00000482879 DNAJB1P25685 340 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 PCSK1P29120 753 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 CA8P35219 290 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 SOX5P35711 763 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms