RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 DNERQ8NFT8 737 aa6.09□□□□□ -1.43
UPF3B-203ENST00000478840 STT3BQ8TCJ2 826 aa6.09□□□□□ -1.43
UPF3B-203ENST00000478840 DACT3Q96B18 629 aaPredicted RBP6.09□□□□□ -1.43
UPF3B-203ENST00000478840 UBXN10Q96LJ8 280 aa6.09□□□□□ -1.43
UPF3B-203ENST00000478840 NELL2Q99435 816 aa6.09□□□□□ -1.43
UPF3B-203ENST00000478840 TCF25Q9BQ70 676 aa6.09□□□□□ -1.43
UPF3B-203ENST00000478840 GSTO2Q9H4Y5 243 aa6.09□□□□□ -1.43
UPF3B-203ENST00000478840 ITM2CQ9NQX7 267 aa6.09□□□□□ -1.43
UPF3B-203ENST00000478840 XPR1Q9UBH6 696 aa6.09□□□□□ -1.43
UPF3B-203ENST00000478840 ITGB1BP2Q9UKP3 347 aa6.09□□□□□ -1.43
UPF3B-203ENST00000478840 AGAP1Q9UPQ3 857 aa6.09□□□□□ -1.43
UPF3B-203ENST00000478840 TMX2Q9Y320 296 aa6.09□□□□□ -1.43
UPF3B-203ENST00000478840 MYO1CO00159 1063 aa6.08□□□□□ -1.44
UPF3B-203ENST00000478840 NDST3O95803 873 aa6.08□□□□□ -1.44
UPF3B-203ENST00000478840 CYP2C9P11712 490 aa6.08□□□□□ -1.44
UPF3B-203ENST00000478840 XRCC6P12956 609 aaKnown RBP eCLIP6.08□□□□□ -1.44
UPF3B-203ENST00000478840 VIPR2P41587 438 aa6.08□□□□□ -1.44
UPF3B-203ENST00000478840 ZNF135P52742 658 aaPredicted RBP6.08□□□□□ -1.44
UPF3B-203ENST00000478840 TBX2Q13207 712 aaPredicted RBP6.08□□□□□ -1.44
UPF3B-203ENST00000478840 SIM2Q14190 667 aaPredicted RBP6.08□□□□□ -1.44
UPF3B-203ENST00000478840 FAM160B1Q5W0V3 765 aa6.08□□□□□ -1.44
UPF3B-203ENST00000478840 KIAA0408Q6ZU52 694 aa6.08□□□□□ -1.44
UPF3B-203ENST00000478840 GAS2L3Q86XJ1 694 aa6.08□□□□□ -1.44
UPF3B-203ENST00000478840 ZNF761Q86XN6 746 aaPredicted RBP6.08□□□□□ -1.44
UPF3B-203ENST00000478840 CLASRPQ8N2M8 674 aaKnown RBP6.08□□□□□ -1.44
UPF3B-203ENST00000478840 SHCBP1Q8NEM2 672 aa6.08□□□□□ -1.44
UPF3B-203ENST00000478840 TMIEQ8NEW7 156 aa6.08□□□□□ -1.44
UPF3B-203ENST00000478840 MPP4Q96JB8 637 aa6.08□□□□□ -1.44
UPF3B-203ENST00000478840 SNX27Q96L92 541 aa6.08□□□□□ -1.44
UPF3B-203ENST00000478840 SORBS1Q9BX66 1292 aaKnown RBP6.08□□□□□ -1.44
UPF3B-203ENST00000478840 STK31Q9BXU1 1019 aa6.08□□□□□ -1.44
UPF3B-203ENST00000478840 AGO3Q9H9G7 860 aaKnown RBP6.08□□□□□ -1.44
UPF3B-203ENST00000478840 AS3MTQ9HBK9 375 aa6.08□□□□□ -1.44
UPF3B-203ENST00000478840 LRFN1Q9P244 771 aa6.08□□□□□ -1.44
UPF3B-203ENST00000478840 IGSF9Q9P2J2 1179 aa6.08□□□□□ -1.44
UPF3B-203ENST00000478840 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.08□□□□□ -1.44
UPF3B-203ENST00000478840 MID2Q9UJV3 735 aa6.08□□□□□ -1.44
UPF3B-203ENST00000478840 MROH6A6NGR9 719 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 E9PLN8 166 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 IRAK2O43187 625 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 CCP110O43303 1012 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 STC2O76061 302 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 AGFG2O95081 481 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 ACVR2AP27037 513 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 PTTG1IPP53801 180 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 MESP2Q0VG99 397 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 METTL24Q5JXM2 366 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 INTS11Q5TA45 600 aaKnown RBP6.07□□□□□ -1.44
UPF3B-203ENST00000478840 JMJD6Q6NYC1 403 aaPredicted RBP6.07□□□□□ -1.44
UPF3B-203ENST00000478840 MZT2AQ6P582 158 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 DRICH1Q6PGQ1 229 aaPredicted RBP6.07□□□□□ -1.44
UPF3B-203ENST00000478840 KBTBD2Q8IY47 623 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 MPP5Q8N3R9 675 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 FITM2Q8N6M3 262 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 CCDC150Q8NCX0 1101 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 ZFP28Q8NHY6 868 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 LRRC46Q96FV0 321 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 PPM1MQ96MI6 270 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 KLHL32Q96NJ5 620 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 VKORC1Q9BQB6 163 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 LSM14BQ9BX40 385 aaKnown RBP6.07□□□□□ -1.44
UPF3B-203ENST00000478840 KRTAP9-2Q9BYQ4 174 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 NELFAQ9H3P2 528 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 RRN3Q9NYV6 651 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 HESX1Q9UBX0 185 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 CLCA2Q9UQC9 943 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 KCTD3Q9Y597 815 aa6.07□□□□□ -1.44
UPF3B-203ENST00000478840 LOC102723971A0A1B0GUV8 181 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 A0A1W2PRX2 142 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 AQP12BA6NM10 295 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 IPO5O00410 1097 aaKnown RBP6.06□□□□□ -1.44
UPF3B-203ENST00000478840 AGR2O95994 175 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 KRT1P04264 644 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 IDEP14735 1019 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 EGR1P18146 543 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 RAC3P60763 192 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 RAP2BP61225 183 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 EFR3AQ14156 821 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 SLC29A2Q14542 456 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 NPY5RQ15761 445 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 CSRP2Q16527 193 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 MAPKAPK3Q16644 382 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 ATXN7L2Q5T6C5 722 aaPredicted RBP6.06□□□□□ -1.44
UPF3B-203ENST00000478840 RRAGBQ5VZM2 374 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 SPTY2D1Q68D10 685 aaPredicted RBP6.06□□□□□ -1.44
UPF3B-203ENST00000478840 LIN54Q6MZP7 749 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 FAM111BQ6SJ93 734 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 FAM83AQ86UY5 434 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 GPR135Q8IZ08 494 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 NAXEQ8NCW5 288 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 IPO4Q8TEX9 1081 aaKnown RBP6.06□□□□□ -1.44
UPF3B-203ENST00000478840 TFAP2CQ92754 450 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 USP13Q92995 863 aaPredicted RBP6.06□□□□□ -1.44
UPF3B-203ENST00000478840 ZNF512Q96ME7 567 aaPredicted RBP6.06□□□□□ -1.44
UPF3B-203ENST00000478840 MOGAT1Q96PD6 335 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 MESP1Q9BRJ9 268 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 CNPPD1Q9BV87 410 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 KATNAL1Q9BW62 490 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 CPEB1Q9BZB8 566 aaKnown RBP6.06□□□□□ -1.44
UPF3B-203ENST00000478840 MS4A7Q9GZW8 240 aaPredicted RBP6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms