RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 SRBD1Q8N5C6 995 aaKnown RBP8.86□□□□□ -0.99
USP54-211ENST00000474929 ZNF248Q8NDW4 579 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 OR2I1PQ8NGU4 316 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 NCOA7Q8NI08 942 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 CPB2Q96IY4 423 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 PRIMPOLQ96LW4 560 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 SEMA4CQ9C0C4 833 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 EBF3Q9H4W6 596 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 DHX33Q9H6R0 707 aaKnown RBP8.86□□□□□ -0.99
USP54-211ENST00000474929 TM7SF3Q9NS93 570 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 POLR3BQ9NW08 1133 aaPredicted RBP8.86□□□□□ -0.99
USP54-211ENST00000474929 FBXL5Q9UKA1 691 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 NFE2L3Q9Y4A8 694 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 PCDHGA1Q9Y5H4 931 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 MGAQ8IWI9 3026 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 PTPRDP23468 1912 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 KNTC1P50748 2209 aa8.85□□□□□ -0.99
USP54-211ENST00000474929 DDX11L8A8MPP1 907 aa8.85□□□□□ -0.99
USP54-211ENST00000474929 PTGESO14684 152 aa8.85□□□□□ -0.99
USP54-211ENST00000474929 PLEKHA8P1O95397 391 aa8.85□□□□□ -0.99
USP54-211ENST00000474929 ATXN1LP0C7T5 689 aaKnown RBP8.85□□□□□ -0.99
USP54-211ENST00000474929 ARF4P18085 180 aaPredicted RBP8.85□□□□□ -0.99
USP54-211ENST00000474929 GABRR2P28476 465 aa8.85□□□□□ -0.99
USP54-211ENST00000474929 CIITAP33076 1130 aa8.85□□□□□ -0.99
USP54-211ENST00000474929 SCRN1Q12765 414 aa8.85□□□□□ -0.99
USP54-211ENST00000474929 LY6DQ14210 128 aa8.85□□□□□ -0.99
USP54-211ENST00000474929 VEPH1Q14D04 833 aa8.85□□□□□ -0.99
USP54-211ENST00000474929 LRCH2Q5VUJ6 765 aa8.85□□□□□ -0.99
USP54-211ENST00000474929 FERMT3Q86UX7 667 aa8.85□□□□□ -0.99
USP54-211ENST00000474929 PGBD3Q8N328 593 aa8.85□□□□□ -0.99
USP54-211ENST00000474929 APPL2Q8NEU8 664 aa8.85□□□□□ -0.99
USP54-211ENST00000474929 RHBDD1Q8TEB9 315 aa8.85□□□□□ -0.99
USP54-211ENST00000474929 SNRNP27Q8WVK2 155 aaKnown RBP8.85□□□□□ -0.99
USP54-211ENST00000474929 RLN3Q8WXF3 142 aa8.85□□□□□ -0.99
USP54-211ENST00000474929 CRYGNQ8WXF5 182 aa8.85□□□□□ -0.99
USP54-211ENST00000474929 TTC9Q92623 222 aa8.85□□□□□ -0.99
USP54-211ENST00000474929 PSMG2Q969U7 264 aa8.85□□□□□ -0.99
USP54-211ENST00000474929 CHFRQ96EP1 664 aa8.85□□□□□ -0.99
USP54-211ENST00000474929 LRRC3BQ96PB8 259 aa8.85□□□□□ -0.99
USP54-211ENST00000474929 ADPGKQ9BRR6 497 aa8.85□□□□□ -0.99
USP54-211ENST00000474929 POLR3CQ9BUI4 534 aaPredicted RBP8.85□□□□□ -0.99
USP54-211ENST00000474929 LRRC3Q9BY71 257 aa8.85□□□□□ -0.99
USP54-211ENST00000474929 PRDM16Q9HAZ2 1276 aa8.85□□□□□ -0.99
USP54-211ENST00000474929 DIAPH3Q9NSV4 1193 aa8.85□□□□□ -0.99
USP54-211ENST00000474929 CACNG4Q9UBN1 327 aa8.85□□□□□ -0.99
USP54-211ENST00000474929 A0A1B0GTW7 788 aa8.84□□□□□ -0.99
USP54-211ENST00000474929 A0A1B0GUA9 196 aa8.84□□□□□ -0.99
USP54-211ENST00000474929 FAM149AA5PLN7 773 aa8.84□□□□□ -0.99
USP54-211ENST00000474929 SMCO2A6NFE2 343 aa8.84□□□□□ -0.99
USP54-211ENST00000474929 N4BP3O15049 544 aa8.84□□□□□ -0.99
USP54-211ENST00000474929 JUPP14923 745 aa8.84□□□□□ -0.99
USP54-211ENST00000474929 CR2P20023 1033 aa8.84□□□□□ -0.99
USP54-211ENST00000474929 GRK6P43250 576 aa8.84□□□□□ -0.99
USP54-211ENST00000474929 PCBP4P57723 403 aaKnown RBP8.84□□□□□ -0.99
USP54-211ENST00000474929 MBTD1Q05BQ5 628 aa8.84□□□□□ -0.99
USP54-211ENST00000474929 NAB2Q15742 525 aa8.84□□□□□ -0.99
USP54-211ENST00000474929 UPP1Q16831 310 aa8.84□□□□□ -0.99
USP54-211ENST00000474929 C6orf132Q5T0Z8 1188 aa8.84□□□□□ -0.99
USP54-211ENST00000474929 STXBP5Q5T5C0 1151 aa8.84□□□□□ -0.99
USP54-211ENST00000474929 WWC2Q6AWC2 1192 aa8.84□□□□□ -0.99
USP54-211ENST00000474929 CASC1Q6TDU7 716 aa8.84□□□□□ -0.99
USP54-211ENST00000474929 TRMT11Q7Z4G4 463 aaKnown RBP8.84□□□□□ -0.99
USP54-211ENST00000474929 APBB1IPQ7Z5R6 666 aaPredicted RBP8.84□□□□□ -0.99
USP54-211ENST00000474929 RGL4Q8IZJ4 473 aa8.84□□□□□ -0.99
USP54-211ENST00000474929 CCDC12Q8WUD4 166 aaPredicted RBP8.84□□□□□ -0.99
USP54-211ENST00000474929 CEP170P1Q96L14 293 aa8.84□□□□□ -0.99
USP54-211ENST00000474929 HSPA12BQ96MM6 686 aa8.84□□□□□ -0.99
USP54-211ENST00000474929 MTRQ99707 1265 aa8.84□□□□□ -0.99
USP54-211ENST00000474929 TRIM4Q9C037 500 aa8.84□□□□□ -0.99
USP54-211ENST00000474929 ECT2Q9H8V3 914 aa8.84□□□□□ -0.99
USP54-211ENST00000474929 GPRC5CQ9NQ84 441 aa8.84□□□□□ -0.99
USP54-211ENST00000474929 SLC38A7Q9NVC3 462 aa8.84□□□□□ -0.99
USP54-211ENST00000474929 HSFX1Q9UBD0 423 aa8.84□□□□□ -0.99
USP54-211ENST00000474929 USP9YO00507 2555 aaPredicted RBP8.83□□□□□ -1
USP54-211ENST00000474929 CCDC69A6NI79 296 aa8.83□□□□□ -1
USP54-211ENST00000474929 GOLGA8CPA6NN73 597 aa8.83□□□□□ -1
USP54-211ENST00000474929 RECQL4O94761 1208 aa8.83□□□□□ -1
USP54-211ENST00000474929 C1SP09871 688 aa8.83□□□□□ -1
USP54-211ENST00000474929 IFNAR2P48551 515 aa8.83□□□□□ -1
USP54-211ENST00000474929 USP11P51784 963 aa8.83□□□□□ -1
USP54-211ENST00000474929 CLCNKBP51801 687 aa8.83□□□□□ -1
USP54-211ENST00000474929 CCDC173Q0VFZ6 552 aa8.83□□□□□ -1
USP54-211ENST00000474929 MRPL58Q14197 206 aaKnown RBP8.83□□□□□ -1
USP54-211ENST00000474929 ZNF268Q14587 947 aaPredicted RBP8.83□□□□□ -1
USP54-211ENST00000474929 EMC2Q15006 297 aa8.83□□□□□ -1
USP54-211ENST00000474929 AMHR2Q16671 573 aa8.83□□□□□ -1
USP54-211ENST00000474929 PTPRNQ16849 979 aa8.83□□□□□ -1
USP54-211ENST00000474929 TBC1D25Q3MII6 688 aa8.83□□□□□ -1
USP54-211ENST00000474929 PPP4R3AQ6IN85 833 aa8.83□□□□□ -1
USP54-211ENST00000474929 NFXL1Q6ZNB6 911 aa8.83□□□□□ -1
USP54-211ENST00000474929 DBX2Q6ZNG2 339 aa8.83□□□□□ -1
USP54-211ENST00000474929 TMTC3Q6ZXV5 915 aa8.83□□□□□ -1
USP54-211ENST00000474929 ANO5Q75V66 913 aa8.83□□□□□ -1
USP54-211ENST00000474929 GAREM2Q75VX8 874 aa8.83□□□□□ -1
USP54-211ENST00000474929 CMTM8Q8IZV2 173 aa8.83□□□□□ -1
USP54-211ENST00000474929 BEST2Q8NFU1 509 aa8.83□□□□□ -1
USP54-211ENST00000474929 HMGB4Q8WW32 186 aa8.83□□□□□ -1
USP54-211ENST00000474929 TMEM143Q96AN5 459 aa8.83□□□□□ -1
USP54-211ENST00000474929 LIN37Q96GY3 246 aaPredicted RBP8.83□□□□□ -1
USP54-211ENST00000474929 UNC45AQ9H3U1 944 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms