RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 CTNND2Q9UQB3 1225 aa16.42■□□□□ 0.22
SDC3-203ENST00000471567 CCDC195A0A1B0GUA6 201 aa16.41■□□□□ 0.22
SDC3-203ENST00000471567 VNN1O95497 513 aa16.41■□□□□ 0.22
SDC3-203ENST00000471567 C8AP07357 584 aa16.41■□□□□ 0.22
SDC3-203ENST00000471567 POU2F2P09086 479 aa16.41■□□□□ 0.22
SDC3-203ENST00000471567 CPB1P15086 417 aa16.41■□□□□ 0.22
SDC3-203ENST00000471567 LHX1P48742 406 aa16.41■□□□□ 0.22
SDC3-203ENST00000471567 SOWAHAQ2M3V2 549 aa16.41■□□□□ 0.22
SDC3-203ENST00000471567 SGSM1Q2NKQ1 1148 aa16.41■□□□□ 0.22
SDC3-203ENST00000471567 PPM1LQ5SGD2 360 aa16.41■□□□□ 0.22
SDC3-203ENST00000471567 TMC5Q6UXY8 1006 aa16.41■□□□□ 0.22
SDC3-203ENST00000471567 RBM43Q6ZSC3 357 aaKnown RBP16.41■□□□□ 0.22
SDC3-203ENST00000471567 FRMD5Q7Z6J6 570 aa16.41■□□□□ 0.22
SDC3-203ENST00000471567 TCEAL8Q8IYN2 117 aa16.41■□□□□ 0.22
SDC3-203ENST00000471567 ADAMTS19Q8TE59 1207 aa16.41■□□□□ 0.22
SDC3-203ENST00000471567 TAF4BQ92750 862 aa16.41■□□□□ 0.22
SDC3-203ENST00000471567 RTP3Q9BQQ7 232 aa16.41■□□□□ 0.22
SDC3-203ENST00000471567 PRKD2Q9BZL6 878 aa16.41■□□□□ 0.22
SDC3-203ENST00000471567 XYLT2Q9H1B5 865 aa16.41■□□□□ 0.22
SDC3-203ENST00000471567 TMEM8AQ9HCN3 771 aa16.41■□□□□ 0.22
SDC3-203ENST00000471567 ARMCX3Q9UH62 379 aaPredicted RBP16.41■□□□□ 0.22
SDC3-203ENST00000471567 RWDD2AQ9UIY3 292 aa16.41■□□□□ 0.22
SDC3-203ENST00000471567 GABRDO14764 452 aa16.4■□□□□ 0.22
SDC3-203ENST00000471567 RFPL2O75678 378 aa16.4■□□□□ 0.22
SDC3-203ENST00000471567 FGFR1OPO95684 399 aaKnown RBP16.4■□□□□ 0.22
SDC3-203ENST00000471567 GNA14O95837 355 aa16.4■□□□□ 0.22
SDC3-203ENST00000471567 TRIM49P0CI25 452 aa16.4■□□□□ 0.22
SDC3-203ENST00000471567 TRIM49CP0CI26 452 aa16.4■□□□□ 0.22
SDC3-203ENST00000471567 GCLMP48507 274 aa16.4■□□□□ 0.22
SDC3-203ENST00000471567 STX17P56962 302 aa16.4■□□□□ 0.22
SDC3-203ENST00000471567 NLRP12P59046 1061 aa16.4■□□□□ 0.22
SDC3-203ENST00000471567 TNNC1P63316 161 aa16.4■□□□□ 0.22
SDC3-203ENST00000471567 MYL7Q01449 175 aa16.4■□□□□ 0.22
SDC3-203ENST00000471567 PPP3CAQ08209 521 aa16.4■□□□□ 0.22
SDC3-203ENST00000471567 SMARCB1Q12824 385 aa16.4■□□□□ 0.22
SDC3-203ENST00000471567 WDR72Q3MJ13 1102 aa16.4■□□□□ 0.22
SDC3-203ENST00000471567 CT47A1Q5JQC4 288 aaPredicted RBP16.4■□□□□ 0.22
SDC3-203ENST00000471567 ADGRF2Q8IZF7 708 aa16.4■□□□□ 0.22
SDC3-203ENST00000471567 OR10T2Q8NGX3 314 aa16.4■□□□□ 0.22
SDC3-203ENST00000471567 SLC7A14Q8TBB6 771 aa16.4■□□□□ 0.22
SDC3-203ENST00000471567 ZNF707Q96C28 371 aaPredicted RBP16.4■□□□□ 0.22
SDC3-203ENST00000471567 ACBD6Q9BR61 282 aa16.4■□□□□ 0.22
SDC3-203ENST00000471567 PHF7Q9BWX1 381 aaPredicted RBP16.4■□□□□ 0.22
SDC3-203ENST00000471567 ZCWPW1Q9H0M4 648 aa16.4■□□□□ 0.22
SDC3-203ENST00000471567 HSFX1Q9UBD0 423 aa16.4■□□□□ 0.22
SDC3-203ENST00000471567 DACH1Q9UI36 760 aa16.4■□□□□ 0.22
SDC3-203ENST00000471567 PRRG1O14668 218 aa16.39■□□□□ 0.21
SDC3-203ENST00000471567 TACC1O75410 805 aa16.39■□□□□ 0.21
SDC3-203ENST00000471567 HLA-DRAP01903 254 aa16.39■□□□□ 0.21
SDC3-203ENST00000471567 OR4Q2P0C623 313 aa16.39■□□□□ 0.21
SDC3-203ENST00000471567 WARSP23381 471 aaKnown RBP16.39■□□□□ 0.21
SDC3-203ENST00000471567 PCSK1P29120 753 aa16.39■□□□□ 0.21
SDC3-203ENST00000471567 TSPY1Q01534 308 aa16.39■□□□□ 0.21
SDC3-203ENST00000471567 ADCY1Q08828 1119 aa16.39■□□□□ 0.21
SDC3-203ENST00000471567 ZNF699Q32M78 642 aa16.39■□□□□ 0.21
SDC3-203ENST00000471567 ZNF667Q5HYK9 610 aa16.39■□□□□ 0.21
SDC3-203ENST00000471567 KRT39Q6A163 491 aa16.39■□□□□ 0.21
SDC3-203ENST00000471567 RNF19BQ6ZMZ0 732 aa16.39■□□□□ 0.21
SDC3-203ENST00000471567 ADHFE1Q8IWW8 467 aa16.39■□□□□ 0.21
SDC3-203ENST00000471567 DCP1BQ8IZD4 617 aaKnown RBP16.39■□□□□ 0.21
SDC3-203ENST00000471567 C2orf15Q8WU43 125 aaKnown RBP16.39■□□□□ 0.21
SDC3-203ENST00000471567 SMG7Q92540 1137 aaKnown RBP16.39■□□□□ 0.21
SDC3-203ENST00000471567 MMS19Q96T76 1030 aa16.39■□□□□ 0.21
SDC3-203ENST00000471567 CYP4F11Q9HBI6 524 aa16.39■□□□□ 0.21
SDC3-203ENST00000471567 DDX43Q9NXZ2 648 aaKnown RBP16.39■□□□□ 0.21
SDC3-203ENST00000471567 TSC2P49815 1807 aa16.39■□□□□ 0.21
SDC3-203ENST00000471567 SPTBN5Q9NRC6 3674 aaKnown RBP16.39■□□□□ 0.21
SDC3-203ENST00000471567 XIRP2A4UGR9 3374 aa16.38■□□□□ 0.21
SDC3-203ENST00000471567 XYLBO75191 536 aa16.38■□□□□ 0.21
SDC3-203ENST00000471567 SEC24AO95486 1093 aa16.38■□□□□ 0.21
SDC3-203ENST00000471567 ASS1P00966 412 aaKnown RBP16.38■□□□□ 0.21
SDC3-203ENST00000471567 P4HA1P13674 534 aa16.38■□□□□ 0.21
SDC3-203ENST00000471567 ERCC5P28715 1186 aaPredicted RBP16.38■□□□□ 0.21
SDC3-203ENST00000471567 PIK3CAP42336 1068 aa16.38■□□□□ 0.21
SDC3-203ENST00000471567 CCDC40Q4G0X9 1142 aa16.38■□□□□ 0.21
SDC3-203ENST00000471567 CCDC183Q5T5S1 534 aa16.38■□□□□ 0.21
SDC3-203ENST00000471567 KBTBD7Q8WVZ9 684 aa16.38■□□□□ 0.21
SDC3-203ENST00000471567 TMEM209Q96SK2 561 aa16.38■□□□□ 0.21
SDC3-203ENST00000471567 UHRF1Q96T88 793 aaPredicted RBP16.38■□□□□ 0.21
SDC3-203ENST00000471567 SRRTQ9BXP5 876 aaKnown RBP16.38■□□□□ 0.21
SDC3-203ENST00000471567 IMPG2Q9BZV3 1241 aa16.38■□□□□ 0.21
SDC3-203ENST00000471567 PIDD1Q9HB75 910 aa16.38■□□□□ 0.21
SDC3-203ENST00000471567 NXF1Q9UBU9 619 aaKnown RBP16.38■□□□□ 0.21
SDC3-203ENST00000471567 TCF20Q9UGU0 1960 aaKnown RBP16.38■□□□□ 0.21
SDC3-203ENST00000471567 UNC80Q8N2C7 3258 aa16.37■□□□□ 0.21
SDC3-203ENST00000471567 MTMR11A4FU01 709 aa16.37■□□□□ 0.21
SDC3-203ENST00000471567 C19orf67A6NJJ6 358 aa16.37■□□□□ 0.21
SDC3-203ENST00000471567 VNN2O95498 520 aa16.37■□□□□ 0.21
SDC3-203ENST00000471567 LRG1P02750 347 aa16.37■□□□□ 0.21
SDC3-203ENST00000471567 WEE2P0C1S8 567 aa16.37■□□□□ 0.21
SDC3-203ENST00000471567 MXI1P50539 228 aa16.37■□□□□ 0.21
SDC3-203ENST00000471567 MARSP56192 900 aaKnown RBP16.37■□□□□ 0.21
SDC3-203ENST00000471567 ZP2Q05996 745 aa16.37■□□□□ 0.21
SDC3-203ENST00000471567 NFE2Q16621 373 aaPredicted RBP16.37■□□□□ 0.21
SDC3-203ENST00000471567 DPCR1Q3MIW9 517 aa16.37■□□□□ 0.21
SDC3-203ENST00000471567 SLC39A12Q504Y0 691 aa16.37■□□□□ 0.21
SDC3-203ENST00000471567 DCAF17Q5H9S7 520 aaPredicted RBP16.37■□□□□ 0.21
SDC3-203ENST00000471567 TCERG1LQ5VWI1 586 aa16.37■□□□□ 0.21
SDC3-203ENST00000471567 LRRTM3Q86VH5 581 aa16.37■□□□□ 0.21
SDC3-203ENST00000471567 OSTM1Q86WC4 334 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms