RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 LRFN2Q9ULH4 789 aa10.59□□□□□ -0.71
SF3A1-207ENST00000471342 MYO6Q9UM54 1294 aa10.59□□□□□ -0.71
SF3A1-207ENST00000471342 STXBP5LQ9Y2K9 1186 aa10.59□□□□□ -0.71
SF3A1-207ENST00000471342 FAN1Q9Y2M0 1017 aa10.59□□□□□ -0.71
SF3A1-207ENST00000471342 REXO2Q9Y3B8 237 aaKnown RBP10.59□□□□□ -0.71
SF3A1-207ENST00000471342 PCDHA11Q9Y5I1 949 aa10.59□□□□□ -0.71
SF3A1-207ENST00000471342 SNX9Q9Y5X1 595 aa10.59□□□□□ -0.71
SF3A1-207ENST00000471342 VWA8A3KMH1 1905 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 MYBPHLA2RUH7 354 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 SOX1O00570 391 aaPredicted RBP10.58□□□□□ -0.72
SF3A1-207ENST00000471342 DDX3XO00571 662 aaKnown RBP eCLIP10.58□□□□□ -0.72
SF3A1-207ENST00000471342 CYB561D2O14569 222 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 CYP26A1O43174 497 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 CA3P07451 260 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 KRT9P35527 623 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 SOX5P35711 763 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 PNPLA4P41247 253 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 KCNJ6P48051 423 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 NDST1P52848 882 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 CACNA2D1P54289 1103 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 ERVFC1P60507 584 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 PLCB2Q00722 1185 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 ORC1Q13415 861 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 BTG3Q14201 252 aaPredicted RBP10.58□□□□□ -0.72
SF3A1-207ENST00000471342 ZNF667Q5HYK9 610 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 RAD9BQ6WBX8 426 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 SCARA5Q6ZMJ2 495 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 USP37Q86T82 979 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 NOP9Q86U38 636 aaKnown RBP10.58□□□□□ -0.72
SF3A1-207ENST00000471342 SLC47A2Q86VL8 602 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 PPM1KQ8N3J5 372 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 KLHL23Q8NBE8 558 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 SPC24Q8NBT2 197 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 NEK11Q8NG66 645 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 SLC20A1Q8WUM9 679 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 CPLX3Q8WVH0 158 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 NUP58Q9BVL2 599 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 UBE2OQ9C0C9 1292 aaKnown RBP10.58□□□□□ -0.72
SF3A1-207ENST00000471342 ABHD10Q9NUJ1 306 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 IMPACTQ9P2X3 320 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 PCDHGC5Q9Y5F6 944 aa10.58□□□□□ -0.72
SF3A1-207ENST00000471342 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.58□□□□□ -0.72
SF3A1-207ENST00000471342 PDE4DIPQ5VU43 2346 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 KIAA1671Q9BY89 1806 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 A0A0U1RQJ8 604 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.57□□□□□ -0.72
SF3A1-207ENST00000471342 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.57□□□□□ -0.72
SF3A1-207ENST00000471342 GRM6O15303 877 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 XPOTO43592 962 aaKnown RBP10.57□□□□□ -0.72
SF3A1-207ENST00000471342 TLL1O43897 1013 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 PHACTR2O75167 634 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 FGF18O76093 207 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 SKILP12757 684 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 IRS1P35568 1242 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 RPL34P49207 117 aaKnown RBP10.57□□□□□ -0.72
SF3A1-207ENST00000471342 CDK17Q00537 523 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 FMO1Q01740 532 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 DSG1Q02413 1049 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 PTP4A2Q12974 167 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 TRPC3Q13507 836 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 MTF1Q14872 753 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 ARHGAP44Q17R89 818 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 SV2CQ496J9 727 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 CHRDL2Q6WN34 429 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 DDX53Q86TM3 631 aaKnown RBP10.57□□□□□ -0.72
SF3A1-207ENST00000471342 DNAAF5Q86Y56 855 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 TDHQ8IZJ6 230 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 C12orf29Q8N999 325 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 ZMIZ2Q8NF64 920 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 ANKRD20A12PQ8NF67 263 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 ATRIPQ8WXE1 791 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 PANX2Q96RD6 677 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 YME1L1Q96TA2 773 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 CLSTN3Q9BQT9 956 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 HERC2P3Q9BVR0 1158 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 ZBP1Q9H171 429 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 RXFP1Q9HBX9 757 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 BARX2Q9UMQ3 279 aaPredicted RBP10.57□□□□□ -0.72
SF3A1-207ENST00000471342 COLQQ9Y215 455 aaPredicted RBP10.57□□□□□ -0.72
SF3A1-207ENST00000471342 DAAM1Q9Y4D1 1078 aa10.57□□□□□ -0.72
SF3A1-207ENST00000471342 HHLA1C9JL84 531 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 AKR1B15C9JRZ8 316 aaPredicted RBP10.56□□□□□ -0.72
SF3A1-207ENST00000471342 O00370 1275 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 SYN3O14994 580 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 BEST1O76090 585 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 GFPT2O94808 682 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 CYP1A1P04798 512 aaPredicted RBP10.56□□□□□ -0.72
SF3A1-207ENST00000471342 OR4Q2P0C623 313 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 CYP11B1P15538 503 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 LAG3P18627 525 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 RFX1P22670 979 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 PAX3P23760 479 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 ACAT1P24752 427 aaKnown RBP10.56□□□□□ -0.72
SF3A1-207ENST00000471342 MFAP3P55082 362 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 PTK2Q05397 1052 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 KCNC3Q14003 757 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 LRIT3Q3SXY7 679 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 VARS2Q5ST30 1063 aaKnown RBP10.56□□□□□ -0.72
SF3A1-207ENST00000471342 SLC8B1Q6J4K2 584 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 LILRA6Q6PI73 481 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms