RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 COL4A2P08572 1712 aa17.91■□□□□ 0.46
CCDC28B-204ENST00000469003 A0A1W2PRU2 124 aa17.9■□□□□ 0.46
CCDC28B-204ENST00000469003 NCAM2O15394 837 aa17.9■□□□□ 0.46
CCDC28B-204ENST00000469003 LDHAP00338 332 aaKnown RBP17.9■□□□□ 0.46
CCDC28B-204ENST00000469003 GARTP22102 1010 aa17.9■□□□□ 0.46
CCDC28B-204ENST00000469003 TARSP26639 723 aaKnown RBP17.9■□□□□ 0.46
CCDC28B-204ENST00000469003 VIPR2P41587 438 aa17.9■□□□□ 0.46
CCDC28B-204ENST00000469003 CASP5P51878 434 aa17.9■□□□□ 0.46
CCDC28B-204ENST00000469003 STK38Q15208 465 aa17.9■□□□□ 0.46
CCDC28B-204ENST00000469003 SLC39A12Q504Y0 691 aa17.9■□□□□ 0.46
CCDC28B-204ENST00000469003 MAML2Q8IZL2 1156 aaPredicted RBP17.9■□□□□ 0.46
CCDC28B-204ENST00000469003 TTC9BQ8N6N2 239 aa17.9■□□□□ 0.46
CCDC28B-204ENST00000469003 PSMG2Q969U7 264 aa17.9■□□□□ 0.46
CCDC28B-204ENST00000469003 E2F7Q96AV8 911 aa17.9■□□□□ 0.46
CCDC28B-204ENST00000469003 CLDN23Q96B33 292 aa17.9■□□□□ 0.46
CCDC28B-204ENST00000469003 BORCS6Q96GS4 357 aa17.9■□□□□ 0.46
CCDC28B-204ENST00000469003 ZNF560Q96MR9 790 aa17.9■□□□□ 0.46
CCDC28B-204ENST00000469003 FAM213AQ9BRX8 229 aa17.9■□□□□ 0.46
CCDC28B-204ENST00000469003 SLITRK6Q9H5Y7 841 aa17.9■□□□□ 0.46
CCDC28B-204ENST00000469003 ZNF334Q9HCZ1 680 aaPredicted RBP17.9■□□□□ 0.46
CCDC28B-204ENST00000469003 PANK4Q9NVE7 773 aa17.9■□□□□ 0.46
CCDC28B-204ENST00000469003 SPATA6Q9NWH7 488 aaPredicted RBP17.9■□□□□ 0.46
CCDC28B-204ENST00000469003 R4GN57 208 aa17.9■□□□□ 0.46
CCDC28B-204ENST00000469003 CACNA1IQ9P0X4 2223 aa17.9■□□□□ 0.46
CCDC28B-204ENST00000469003 DMXL1Q9Y485 3027 aa17.89■□□□□ 0.45
CCDC28B-204ENST00000469003 SHISA7A6NL88 538 aa17.89■□□□□ 0.45
CCDC28B-204ENST00000469003 FGF19O95750 216 aa17.89■□□□□ 0.45
CCDC28B-204ENST00000469003 LMNAP02545 664 aaKnown RBP17.89■□□□□ 0.45
CCDC28B-204ENST00000469003 GDI1P31150 447 aa17.89■□□□□ 0.45
CCDC28B-204ENST00000469003 RPS9P46781 194 aaKnown RBP17.89■□□□□ 0.45
CCDC28B-204ENST00000469003 TUFMP49411 452 aaKnown RBP17.89■□□□□ 0.45
CCDC28B-204ENST00000469003 SV2CQ496J9 727 aa17.89■□□□□ 0.45
CCDC28B-204ENST00000469003 WSCD1Q658N2 575 aa17.89■□□□□ 0.45
CCDC28B-204ENST00000469003 DNAJB7Q7Z6W7 309 aaPredicted RBP17.89■□□□□ 0.45
CCDC28B-204ENST00000469003 ITIH5Q86UX2 942 aa17.89■□□□□ 0.45
CCDC28B-204ENST00000469003 MFSD6LQ8IWD5 586 aa17.89■□□□□ 0.45
CCDC28B-204ENST00000469003 BRSK2Q8IWQ3 736 aa17.89■□□□□ 0.45
CCDC28B-204ENST00000469003 SYCP3Q8IZU3 236 aa17.89■□□□□ 0.45
CCDC28B-204ENST00000469003 THEM5Q8N1Q8 247 aa17.89■□□□□ 0.45
CCDC28B-204ENST00000469003 LINC00301Q8NCQ3 95 aa17.89■□□□□ 0.45
CCDC28B-204ENST00000469003 ZSWIM2Q8NEG5 633 aa17.89■□□□□ 0.45
CCDC28B-204ENST00000469003 C2orf15Q8WU43 125 aaKnown RBP17.89■□□□□ 0.45
CCDC28B-204ENST00000469003 FGFBP2Q9BYJ0 223 aa17.89■□□□□ 0.45
CCDC28B-204ENST00000469003 FBXO4Q9UKT5 387 aa17.89■□□□□ 0.45
CCDC28B-204ENST00000469003 TICRRQ7Z2Z1 1910 aa17.89■□□□□ 0.45
CCDC28B-204ENST00000469003 HEPACAM2A8MVW5 462 aa17.88■□□□□ 0.45
CCDC28B-204ENST00000469003 KPNA7A9QM74 516 aa17.88■□□□□ 0.45
CCDC28B-204ENST00000469003 MAN2B1O00754 1011 aa17.88■□□□□ 0.45
CCDC28B-204ENST00000469003 LAMTOR5O43504 91 aa17.88■□□□□ 0.45
CCDC28B-204ENST00000469003 SOAT2O75908 522 aa17.88■□□□□ 0.45
CCDC28B-204ENST00000469003 PNPLA4P41247 253 aa17.88■□□□□ 0.45
CCDC28B-204ENST00000469003 WNT7BP56706 349 aa17.88■□□□□ 0.45
CCDC28B-204ENST00000469003 SMARCB1Q12824 385 aa17.88■□□□□ 0.45
CCDC28B-204ENST00000469003 ZNF528Q3MIS6 628 aa17.88■□□□□ 0.45
CCDC28B-204ENST00000469003 GAREM2Q75VX8 874 aa17.88■□□□□ 0.45
CCDC28B-204ENST00000469003 CCDC65Q8IXS2 484 aa17.88■□□□□ 0.45
CCDC28B-204ENST00000469003 PDILTQ8N807 584 aa17.88■□□□□ 0.45
CCDC28B-204ENST00000469003 KCNG4Q8TDN1 519 aa17.88■□□□□ 0.45
CCDC28B-204ENST00000469003 CACTINQ8WUQ7 758 aaKnown RBP17.88■□□□□ 0.45
CCDC28B-204ENST00000469003 SAAL1Q96ER3 474 aa17.88■□□□□ 0.45
CCDC28B-204ENST00000469003 NCANO14594 1321 aa17.88■□□□□ 0.45
CCDC28B-204ENST00000469003 NUP210Q8TEM1 1887 aaPredicted RBP17.88■□□□□ 0.45
CCDC28B-204ENST00000469003 ZNF263O14978 683 aa17.87■□□□□ 0.45
CCDC28B-204ENST00000469003 SPTLC2O15270 562 aa17.87■□□□□ 0.45
CCDC28B-204ENST00000469003 EXTL3O43909 919 aa17.87■□□□□ 0.45
CCDC28B-204ENST00000469003 PPP6R2O75170 966 aa17.87■□□□□ 0.45
CCDC28B-204ENST00000469003 TFAMQ00059 246 aaKnown RBP17.87■□□□□ 0.45
CCDC28B-204ENST00000469003 FZD5Q13467 585 aa17.87■□□□□ 0.45
CCDC28B-204ENST00000469003 VEPH1Q14D04 833 aa17.87■□□□□ 0.45
CCDC28B-204ENST00000469003 MGAT5BQ3V5L5 792 aa17.87■□□□□ 0.45
CCDC28B-204ENST00000469003 SPPL2BQ8TCT7 592 aa17.87■□□□□ 0.45
CCDC28B-204ENST00000469003 ZNF396Q96N95 335 aaPredicted RBP17.87■□□□□ 0.45
CCDC28B-204ENST00000469003 SEPT5Q99719 369 aaPredicted RBP17.87■□□□□ 0.45
CCDC28B-204ENST00000469003 CBWD1Q9BRT8 395 aa17.87■□□□□ 0.45
CCDC28B-204ENST00000469003 LRRC27Q9C0I9 530 aa17.87■□□□□ 0.45
CCDC28B-204ENST00000469003 TNMDQ9H2S6 317 aa17.87■□□□□ 0.45
CCDC28B-204ENST00000469003 ATXN3LQ9H3M9 355 aa17.87■□□□□ 0.45
CCDC28B-204ENST00000469003 TMEM206Q9H813 350 aa17.87■□□□□ 0.45
CCDC28B-204ENST00000469003 RBAKQ9NYW8 714 aaPredicted RBP17.87■□□□□ 0.45
CCDC28B-204ENST00000469003 NCOR2Q9Y618 2525 aa17.86■□□□□ 0.45
CCDC28B-204ENST00000469003 PRPF6O94906 941 aaKnown RBP17.86■□□□□ 0.45
CCDC28B-204ENST00000469003 ATF6P18850 670 aa17.86■□□□□ 0.45
CCDC28B-204ENST00000469003 GABRR2P28476 465 aa17.86■□□□□ 0.45
CCDC28B-204ENST00000469003 POLR2BP30876 1174 aaKnown RBP17.86■□□□□ 0.45
CCDC28B-204ENST00000469003 ARHGAP15Q53QZ3 475 aa17.86■□□□□ 0.45
CCDC28B-204ENST00000469003 STXBP5Q5T5C0 1151 aa17.86■□□□□ 0.45
CCDC28B-204ENST00000469003 LRRTM3Q86VH5 581 aa17.86■□□□□ 0.45
CCDC28B-204ENST00000469003 ARID3BQ8IVW6 561 aaPredicted RBP17.86■□□□□ 0.45
CCDC28B-204ENST00000469003 YAF2Q8IY57 180 aa17.86■□□□□ 0.45
CCDC28B-204ENST00000469003 DCP1BQ8IZD4 617 aaKnown RBP17.86■□□□□ 0.45
CCDC28B-204ENST00000469003 ZNF687Q8N1G0 1237 aa17.86■□□□□ 0.45
CCDC28B-204ENST00000469003 C1orf127Q8N9H9 656 aa17.86■□□□□ 0.45
CCDC28B-204ENST00000469003 FAM200AQ8TCP9 573 aa17.86■□□□□ 0.45
CCDC28B-204ENST00000469003 SNX21Q969T3 373 aa17.86■□□□□ 0.45
CCDC28B-204ENST00000469003 RSPRY1Q96DX4 576 aa17.86■□□□□ 0.45
CCDC28B-204ENST00000469003 LPIN3Q9BQK8 851 aa17.86■□□□□ 0.45
CCDC28B-204ENST00000469003 MKNK1Q9BUB5 465 aa17.86■□□□□ 0.45
CCDC28B-204ENST00000469003 CUEDC2Q9H467 287 aa17.86■□□□□ 0.45
CCDC28B-204ENST00000469003 NDRG2Q9UN36 371 aaKnown RBP17.86■□□□□ 0.45
CCDC28B-204ENST00000469003 AGAP1Q9UPQ3 857 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms