RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 NSUN6Q8TEA1 469 aaKnown RBP12.51□□□□□ -0.41
MSH6-204ENST00000445503 FAF2Q96CS3 445 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 KIAA1586Q9HCI6 787 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 SMG5Q9UPR3 1016 aaKnown RBP12.51□□□□□ -0.41
MSH6-204ENST00000445503 ATP5HO75947 161 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 CALB1P05937 261 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 MRPS9P82933 396 aaKnown RBP12.51□□□□□ -0.41
MSH6-204ENST00000445503 EMC2Q15006 297 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 FAXCQ5TGI0 409 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 TRIM72Q6ZMU5 477 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 ANO5Q75V66 913 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 FAM228AQ86W67 206 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 MAP4K3Q8IVH8 894 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 GRAP2O75791 330 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 CCNE2O96020 404 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 KRT3P12035 628 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 FOXN2P32314 431 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 TMPRSS15P98073 1019 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 PPP2R5DQ14738 602 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 MTFR1Q15390 333 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 ZNF699Q32M78 642 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 SLFN12LQ6IEE8 588 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 OR6B2Q6IFH4 312 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 MFSD5Q6N075 450 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 ABRAQ8N0Z2 381 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 NGRNQ9NPE2 291 aaKnown RBP12.5□□□□□ -0.41
MSH6-204ENST00000445503 METTL5Q9NRN9 209 aaKnown RBP12.5□□□□□ -0.41
MSH6-204ENST00000445503 TAC1P20366 129 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 ADRA1DP25100 572 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 HSPA1LP34931 641 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 MMP14P50281 582 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 HMGCS2P54868 508 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 CRYMQ14894 314 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 ANKRD20A2Q5SQ80 823 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 ANKRD20A1Q5TYW2 823 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 AGGF1Q8N302 714 aaeCLIP12.5□□□□□ -0.41
MSH6-204ENST00000445503 HIPK4Q8NE63 616 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 TXLNGYQ9BZA5 131 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 A1CFQ9NQ94 594 aaKnown RBP12.5□□□□□ -0.41
MSH6-204ENST00000445503 CYP26B1Q9NR63 512 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 DONSONQ9NYP3 566 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 HEY2Q9UBP5 337 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 XPO7Q9UIA9 1087 aaKnown RBP12.5□□□□□ -0.41
MSH6-204ENST00000445503 PSTPIP1O43586 416 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 TBXAS1P24557 533 aaPredicted RBP12.5□□□□□ -0.41
MSH6-204ENST00000445503 EIF3EP60228 445 aaKnown RBP12.5□□□□□ -0.41
MSH6-204ENST00000445503 MAMLD1Q13495 774 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 PPP6R3Q5H9R7 873 aaPredicted RBP12.5□□□□□ -0.41
MSH6-204ENST00000445503 EXD1Q8NHP7 514 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 ACTL9Q8TC94 416 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 ZNF606Q8WXB4 792 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 TIPINQ9BVW5 301 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 KIAA1683Q9H0B3 1180 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 ZNF302Q9NR11 478 aa12.5□□□□□ -0.41
MSH6-204ENST00000445503 COPEO14579 308 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 CETPP11597 493 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 DSG3P32926 999 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 ACTR2P61160 394 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 OTUD4Q01804 1114 aaKnown RBP12.49□□□□□ -0.41
MSH6-204ENST00000445503 SPOCD1Q6ZMY3 1216 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 ZBTB8OSQ8IWT0 167 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 CCDC33Q8N5R6 958 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 FBXO36Q8NEA4 188 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 FAM111AQ96PZ2 611 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 HERPUD2Q9BSE4 406 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 NRBP2Q9NSY0 501 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 TXNDC16Q9P2K2 825 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 MAGED2Q9UNF1 606 aaPredicted RBP12.49□□□□□ -0.41
MSH6-204ENST00000445503 FZD1Q9UP38 647 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 SLC12A4Q9UP95 1085 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 MROH7Q68CQ1 1323 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 TXNDC9O14530 226 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 DNALI1O14645 258 aaPredicted RBP12.49□□□□□ -0.41
MSH6-204ENST00000445503 TOM1L1O75674 476 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 MAPTP10636 758 aaKnown RBP12.49□□□□□ -0.41
MSH6-204ENST00000445503 GCLCP48506 637 aaPredicted RBP12.49□□□□□ -0.41
MSH6-204ENST00000445503 GCNT1Q02742 428 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 EAPPQ56P03 285 aaPredicted RBP12.49□□□□□ -0.41
MSH6-204ENST00000445503 GLIS1Q8NBF1 620 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 TSSK1BQ9BXA7 367 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 MTMR12Q9C0I1 747 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 WDR46O15213 610 aaKnown RBP12.49□□□□□ -0.41
MSH6-204ENST00000445503 KIF1CO43896 1103 aaKnown RBP12.49□□□□□ -0.41
MSH6-204ENST00000445503 YY1P25490 414 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 HMGB2P26583 209 aaKnown RBP12.49□□□□□ -0.41
MSH6-204ENST00000445503 GSCP56915 257 aaPredicted RBP12.49□□□□□ -0.41
MSH6-204ENST00000445503 KDSRQ06136 332 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 BNIP1Q12981 228 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 C1orf220Q5T0J3 134 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 LGSNQ5TDP6 509 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 TDRD10Q5VZ19 366 aaKnown RBP12.49□□□□□ -0.41
MSH6-204ENST00000445503 HEXIM2Q96MH2 286 aaKnown RBP12.49□□□□□ -0.41
MSH6-204ENST00000445503 FAM161BQ96MY7 647 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 VCXQ9H320 206 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 PXMP2Q9NR77 195 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 NENFQ9UMX5 172 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 SHANK3Q9BYB0 1731 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 NAV1Q8NEY1 1877 aa12.49□□□□□ -0.41
MSH6-204ENST00000445503 SYNJ2BP-COX16A0A087WUM0 186 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 IQANK1A0A1B0GTG1 560 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms