RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 TOP6BLQ8N6T0 577 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 MOSPD2Q8NHP6 518 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 ETNPPLQ8TBG4 499 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 CPT1CQ8TCG5 803 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 STT3BQ8TCJ2 826 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 CALML6Q8TD86 181 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 NOC3LQ8WTT2 800 aaKnown RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 SYTL4Q96C24 671 aaPredicted RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 GRAMD1AQ96CP6 724 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 PTPN18Q99952 460 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 DNAI2Q9GZS0 605 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 PCDHAC1Q9H158 963 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 CHMP4BQ9H444 224 aaKnown RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 NECTIN3Q9NQS3 549 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 ADPRHL2Q9NX46 363 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 DCAF16Q9NXF7 216 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 EPS15L1Q9UBC2 864 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 SUFUQ9UMX1 484 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 NSFL1CQ9UNZ2 370 aaKnown RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 DERAQ9Y315 318 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 USP15Q9Y4E8 981 aaPredicted RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 MYPNQ86TC9 1320 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 KRT87PA6NCN2 255 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 NDC80O14777 642 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 TSPAN3O60637 253 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 ERAL1O75616 437 aaKnown RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 CCNDBP1O95273 360 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 GNAI3P08754 354 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 ENDOUP21128 410 aaKnown RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 LTKP29376 864 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 ECHS1P30084 290 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 HSPA4P34932 840 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 THPOP40225 353 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 CAPZA2P47755 286 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 ZNF132P52740 706 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 RPS3AP61247 264 aaKnown RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 GNAI1P63096 354 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 EXOSC9Q06265 439 aaKnown RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 GOLGA8DPQ0D2H9 430 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 COASYQ13057 564 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 KCNB1Q14721 858 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 SETMARQ53H47 684 aaPredicted RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 USP49Q70CQ1 688 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 DMRTC2Q8IXT2 367 aaPredicted RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 TRMT2AQ8IZ69 625 aaKnown RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 CNTROBQ8N137 903 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 GLIS1Q8NBF1 620 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 CPT1BQ92523 772 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 USP6NLQ92738 828 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 DLG3Q92796 817 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 VPS33AQ96AX1 596 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 NMD3Q96D46 503 aaKnown RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 APOPT1Q96IL0 206 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 HIST1H2AHQ96KK5 128 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 HIST1H2AJQ99878 128 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 THUMPD3Q9BV44 507 aaKnown RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 FOXP3Q9BZS1 431 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 PRDM12Q9H4Q4 367 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 ERVMER34-1Q9H9K5 563 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 COPS7BQ9H9Q2 264 aaPredicted RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 ERVK-5Q9HDB9 667 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 GALNT8Q9NY28 637 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 AKAP7Q9P0M2 348 aaPredicted RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 FBXL5Q9UKA1 691 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 HCN2Q9UL51 889 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 PAXBP1Q9Y5B6 917 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 ANGPTL3Q9Y5C1 460 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 SYNRGQ9UMZ2 1314 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 TCRBV5S4A2TA0A5A2 114 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 E7EVH7 732 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 RAB27BO00194 218 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 SLC27A2O14975 620 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 KIAA0355O15063 1070 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 DNPH1O43598 174 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 DIAPH2O60879 1101 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 ENDOD1O94919 500 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 AHSGP02765 367 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 TK1P04183 234 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 RPL10P27635 214 aaKnown RBP2.53□□□□□ -2
CCDC88A-208ENST00000444458 MXRA7P84157 204 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 MRPL28Q13084 256 aaKnown RBP2.53□□□□□ -2
CCDC88A-208ENST00000444458 SNAPC2Q13487 334 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 ACVR2BQ13705 512 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 EFR3AQ14156 821 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 UBAP2LQ14157 1087 aaKnown RBP2.53□□□□□ -2
CCDC88A-208ENST00000444458 HABP2Q14520 560 aaPredicted RBP2.53□□□□□ -2
CCDC88A-208ENST00000444458 TNIP1Q15025 636 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 HSP90AA5PQ58FG0 334 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 KAZNQ674X7 775 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 CYP2R1Q6VVX0 501 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 LRRC8DQ7L1W4 858 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 SYT13Q7L8C5 426 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 PXKQ7Z7A4 578 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 HERC6Q8IVU3 1022 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 CDYL2Q8N8U2 506 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 NAT8LQ8N9F0 302 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 POMGNT2Q8NAT1 580 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 OR6J1Q8NGC5 347 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 GIMAP7Q8NHV1 300 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 CTNNBL1Q8WYA6 563 aaPredicted RBP2.53□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms