RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 WEE1P30291 646 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 SERPINB10P48595 397 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 RGS4P49798 205 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 ABCE1P61221 599 aaKnown RBP12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 TRMT2AQ8IZ69 625 aaKnown RBP12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 NDEL1Q9GZM8 345 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 RAD18Q9NS91 495 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 DEPDC5O75140 1603 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 ENO1P06733 434 aaKnown RBP12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 OOSP2Q86WS3 158 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 CHSY1Q86X52 802 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 DEFB129Q9H1M3 183 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 RAB6BQ9NRW1 208 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 NUP98P52948 1817 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 ACADSBP45954 432 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 KDSRQ06136 332 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 CUL3Q13618 768 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 CLEC16AQ2KHT3 1053 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 SAMD7Q7Z3H4 446 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 SMAD5Q99717 465 aaKnown RBP12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 PI4K2AQ9BTU6 479 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 KLK14Q9P0G3 267 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 DCDC2CA8MYV0 355 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 H7C4K7 107 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 PDGFRAP16234 1089 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 TFB1MQ8WVM0 346 aaKnown RBP12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 PLEKHA8Q96JA3 519 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 NFKBIZQ9BYH8 718 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 USE1Q9NZ43 259 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 GAS2L3Q86XJ1 694 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 C1orf167Q5SNV9 1468 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 FAM47DPA6NHR8 397 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 SLC25A27O95847 323 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 TMEM169Q96HH4 297 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 ZC4H2Q9NQZ6 224 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 NFKBIL1Q9UBC1 381 aaPredicted RBP12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 IPPQ9Y573 584 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 TTC26A0AVF1 554 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 PDXKO00764 312 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 RPS12P25398 132 aaKnown RBP12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 PDIA5Q14554 519 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 DCP1BQ8IZD4 617 aaKnown RBP12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 SPATA31A1Q5TZJ5 1347 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 HAUS5O94927 633 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 GSNP06396 782 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 EPB42P16452 691 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 RPAINQ86UA6 219 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 DPP3Q9NY33 737 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 PRR12Q9ULL5 1215 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 PRG3Q9Y2Y8 225 aaPredicted RBP12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 PSMD3O43242 534 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 SEC24DO94855 1032 aaPredicted RBP12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 SOX11P35716 441 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 STN1Q9H668 368 aaKnown RBP12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 SPATS2LQ9NUQ6 558 aaKnown RBP12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 RASSF10A6NK89 507 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 TRADDQ15628 312 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 ARHGAP18Q8N392 663 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 IL1RL2Q9HB29 575 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 PITPNM2Q9BZ72 1349 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 VCLP18206 1134 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 TCF7P36402 384 aaPredicted RBP12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 PHACTR4Q8IZ21 702 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 TASP1Q9H6P5 420 aa12.59□□□□□ -0.39
CCDC88A-207ENST00000436346 CD163L1Q9NR16 1453 aa12.58□□□□□ -0.39
CCDC88A-207ENST00000436346 SYNCRIPO60506 623 aaKnown RBP12.58□□□□□ -0.39
CCDC88A-207ENST00000436346 LRRC14Q15048 493 aa12.58□□□□□ -0.39
CCDC88A-207ENST00000436346 ZC2HC1CQ53FD0 456 aaPredicted RBP12.58□□□□□ -0.39
CCDC88A-207ENST00000436346 SYDE1Q6ZW31 735 aaPredicted RBP12.58□□□□□ -0.39
CCDC88A-207ENST00000436346 RBBP8NLQ8NC74 664 aaPredicted RBP12.58□□□□□ -0.39
CCDC88A-207ENST00000436346 KCNV2Q8TDN2 545 aa12.58□□□□□ -0.39
CCDC88A-207ENST00000436346 KRT35Q92764 455 aa12.58□□□□□ -0.39
CCDC88A-207ENST00000436346 MIA3Q5JRA6 1907 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 UGP2Q16851 508 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 AP1ARQ63HQ0 302 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 FMR1NBQ8N0W7 255 aaPredicted RBP12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 SHCBP1Q8NEM2 672 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 NEDD1Q8NHV4 660 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 ZKSCAN4Q969J2 545 aaPredicted RBP12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 RRN3P2A6NIE6 340 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 NDUFB5O43674 189 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 WEE2P0C1S8 567 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 STILQ15468 1287 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 C10orf53Q8N6V4 93 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 KCNH7Q9NS40 1196 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 CRLS1Q9UJA2 301 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 MAPRE1Q15691 268 aaKnown RBP12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 C3P01024 1663 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 PEAK1Q9H792 1746 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 GUCA1CO95843 209 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 LRRC8BQ6P9F7 803 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 FBXO16Q8IX29 292 aaPredicted RBP12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 COG1Q8WTW3 980 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 DTNAQ9Y4J8 743 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 PQBP1O60828 265 aaKnown RBP12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 SLC2A3P11169 496 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 MLNP12872 115 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 DPEP1P16444 411 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 RFX3P48380 749 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 PLA2G12BQ9BX93 195 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms