RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 SMYD3Q9H7B4 428 aa13.17□□□□□ -0.3
LINC00339-204ENST00000434233 CISHQ9NSE2 258 aa13.17□□□□□ -0.3
LINC00339-204ENST00000434233 BARX2Q9UMQ3 279 aaPredicted RBP13.17□□□□□ -0.3
LINC00339-204ENST00000434233 CAPN11Q9UMQ6 739 aa13.17□□□□□ -0.3
LINC00339-204ENST00000434233 CNTN6Q9UQ52 1028 aa13.17□□□□□ -0.3
LINC00339-204ENST00000434233 SSX2IPQ9Y2D8 614 aa13.17□□□□□ -0.3
LINC00339-204ENST00000434233 H3BNC9 293 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 H7C4K7 107 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 FOXN3O00409 490 aaPredicted RBP13.16□□□□□ -0.3
LINC00339-204ENST00000434233 TPM1P09493 284 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 DNAJB2P25686 324 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 TKTP29401 623 aaKnown RBP13.16□□□□□ -0.3
LINC00339-204ENST00000434233 JAM2P57087 298 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 DSG1Q02413 1049 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 YWHAHQ04917 246 aaPredicted RBP13.16□□□□□ -0.3
LINC00339-204ENST00000434233 BMS1Q14692 1282 aaKnown RBP13.16□□□□□ -0.3
LINC00339-204ENST00000434233 KIAA0319Q5VV43 1072 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 PPP2R2DQ66LE6 453 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 OVOS1Q6IE37 1185 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 PDXDC1Q6P996 788 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 PPFIBP1Q86W92 1011 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 CEP57Q86XR8 500 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 DRC7Q8IY82 874 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 ADGRF2Q8IZF7 708 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 VPS52Q8N1B4 723 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 FBXO22Q8NEZ5 403 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 ZNF397Q8NF99 534 aaPredicted RBP13.16□□□□□ -0.3
LINC00339-204ENST00000434233 OR6B3Q8NGW1 331 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 CPLX3Q8WVH0 158 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 KBTBD7Q8WVZ9 684 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 SHC3Q92529 594 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 ANP32BQ92688 251 aaKnown RBP13.16□□□□□ -0.3
LINC00339-204ENST00000434233 TIFAQ96CG3 184 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 SPAG5Q96R06 1193 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 ARID3AQ99856 593 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 ACBD6Q9BR61 282 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 MRPL45Q9BRJ2 306 aaKnown RBP13.16□□□□□ -0.3
LINC00339-204ENST00000434233 VN1R3Q9BXE9 311 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 DNAI2Q9GZS0 605 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 NUCKS1Q9H1E3 243 aaKnown RBP13.16□□□□□ -0.3
LINC00339-204ENST00000434233 NLRC4Q9NPP4 1024 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 IMPACTQ9P2X3 320 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 AJAP1Q9UKB5 411 aaPredicted RBP13.16□□□□□ -0.3
LINC00339-204ENST00000434233 LUC7L2Q9Y383 392 aaKnown RBP13.16□□□□□ -0.3
LINC00339-204ENST00000434233 PCDHB4Q9Y5E5 795 aa13.16□□□□□ -0.3
LINC00339-204ENST00000434233 TIMM13Q9Y5L4 95 aaPredicted RBP13.16□□□□□ -0.3
LINC00339-204ENST00000434233 VWA8A3KMH1 1905 aa13.15□□□□□ -0.3
LINC00339-204ENST00000434233 TBC1D4O60343 1298 aa13.15□□□□□ -0.3
LINC00339-204ENST00000434233 CILPO75339 1184 aa13.15□□□□□ -0.3
LINC00339-204ENST00000434233 GYPCP04921 128 aa13.15□□□□□ -0.3
LINC00339-204ENST00000434233 CASP14P31944 242 aa13.15□□□□□ -0.3
LINC00339-204ENST00000434233 STAT1P42224 750 aa13.15□□□□□ -0.3
LINC00339-204ENST00000434233 RAP1GAPP47736 663 aa13.15□□□□□ -0.3
LINC00339-204ENST00000434233 NDST1P52848 882 aa13.15□□□□□ -0.3
LINC00339-204ENST00000434233 ZBED6P86452 979 aa13.15□□□□□ -0.3
LINC00339-204ENST00000434233 GPM6BQ13491 265 aa13.15□□□□□ -0.3
LINC00339-204ENST00000434233 RAPGEF1Q13905 1077 aa13.15□□□□□ -0.3
LINC00339-204ENST00000434233 VARS2Q5ST30 1063 aaKnown RBP13.15□□□□□ -0.3
LINC00339-204ENST00000434233 KIAA1841Q6NSI8 718 aa13.15□□□□□ -0.3
LINC00339-204ENST00000434233 SCARA5Q6ZMJ2 495 aa13.15□□□□□ -0.3
LINC00339-204ENST00000434233 ANKS3Q6ZW76 656 aa13.15□□□□□ -0.3
LINC00339-204ENST00000434233 OSTM1Q86WC4 334 aa13.15□□□□□ -0.3
LINC00339-204ENST00000434233 FMNL3Q8IVF7 1028 aa13.15□□□□□ -0.3
LINC00339-204ENST00000434233 FAM71AQ8IYT1 594 aa13.15□□□□□ -0.3
LINC00339-204ENST00000434233 CRYBG2Q8N1P7 616 aa13.15□□□□□ -0.3
LINC00339-204ENST00000434233 LNX1Q8TBB1 728 aaPredicted RBP13.15□□□□□ -0.3
LINC00339-204ENST00000434233 WHAMMQ8TF30 809 aa13.15□□□□□ -0.3
LINC00339-204ENST00000434233 PIK3R5Q8WYR1 880 aa13.15□□□□□ -0.3
LINC00339-204ENST00000434233 BAP1Q92560 729 aa13.15□□□□□ -0.3
LINC00339-204ENST00000434233 GPR88Q9GZN0 384 aa13.15□□□□□ -0.3
LINC00339-204ENST00000434233 ZBP1Q9H171 429 aa13.15□□□□□ -0.3
LINC00339-204ENST00000434233 ALG13Q9NP73 1137 aaKnown RBP13.15□□□□□ -0.3
LINC00339-204ENST00000434233 DDX43Q9NXZ2 648 aaKnown RBP13.15□□□□□ -0.3
LINC00339-204ENST00000434233 STXBP5LQ9Y2K9 1186 aa13.15□□□□□ -0.3
LINC00339-204ENST00000434233 BACE2Q9Y5Z0 518 aa13.15□□□□□ -0.3
LINC00339-204ENST00000434233 PLXNA4Q9HCM2 1894 aa13.14□□□□□ -0.31
LINC00339-204ENST00000434233 TNRC18O15417 2968 aaPredicted RBP13.14□□□□□ -0.31
LINC00339-204ENST00000434233 A8MXQ7 604 aa13.14□□□□□ -0.31
LINC00339-204ENST00000434233 RNF225M0QZC1 329 aaPredicted RBP13.14□□□□□ -0.31
LINC00339-204ENST00000434233 LILRB3O75022 631 aa13.14□□□□□ -0.31
LINC00339-204ENST00000434233 CTSAP10619 480 aa13.14□□□□□ -0.31
LINC00339-204ENST00000434233 CD58P19256 250 aa13.14□□□□□ -0.31
LINC00339-204ENST00000434233 LMO2P25791 158 aa13.14□□□□□ -0.31
LINC00339-204ENST00000434233 PCSK1P29120 753 aa13.14□□□□□ -0.31
LINC00339-204ENST00000434233 SOX5P35711 763 aa13.14□□□□□ -0.31
LINC00339-204ENST00000434233 GLUD2P49448 558 aa13.14□□□□□ -0.31
LINC00339-204ENST00000434233 RAD23BP54727 409 aa13.14□□□□□ -0.31
LINC00339-204ENST00000434233 BPIFB4P59827 614 aa13.14□□□□□ -0.31
LINC00339-204ENST00000434233 ARID5BQ14865 1188 aa13.14□□□□□ -0.31
LINC00339-204ENST00000434233 RTP2Q5QGT7 225 aa13.14□□□□□ -0.31
LINC00339-204ENST00000434233 PDE12Q6L8Q7 609 aaKnown RBP13.14□□□□□ -0.31
LINC00339-204ENST00000434233 TMEM270Q6UE05 265 aa13.14□□□□□ -0.31
LINC00339-204ENST00000434233 SPRED2Q7Z698 418 aa13.14□□□□□ -0.31
LINC00339-204ENST00000434233 POF1BQ8WVV4 589 aa13.14□□□□□ -0.31
LINC00339-204ENST00000434233 RIN2Q8WYP3 895 aaPredicted RBP13.14□□□□□ -0.31
LINC00339-204ENST00000434233 SYN2Q92777 582 aaPredicted RBP13.14□□□□□ -0.31
LINC00339-204ENST00000434233 TMEM176AQ96HP8 235 aa13.14□□□□□ -0.31
LINC00339-204ENST00000434233 TNIP3Q96KP6 325 aa13.14□□□□□ -0.31
LINC00339-204ENST00000434233 NT5C1AQ9BXI3 368 aa13.14□□□□□ -0.31
LINC00339-204ENST00000434233 LMAN2LQ9H0V9 348 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms