RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 SDCBP2Q9H190 292 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 TLE6Q9H808 572 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.34□□□□□ -0.27
USP40-205ENST00000430158 FBXL5Q9UKA1 691 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 POLIQ9UNA4 740 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 SSX2IPQ9Y2D8 614 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 SNX9Q9Y5X1 595 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 PTPRDP23468 1912 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.33□□□□□ -0.28
USP40-205ENST00000430158 LRRC10BA6NIK2 292 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 TULP1O00294 542 aaPredicted RBP13.33□□□□□ -0.28
USP40-205ENST00000430158 P4HA2O15460 535 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 LINC01565O15544 149 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 PHACTR2O75167 634 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 TACC1O75410 805 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 ABLIM3O94929 683 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 ODC1P11926 461 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 EEF1GP26641 437 aaKnown RBP13.33□□□□□ -0.28
USP40-205ENST00000430158 ASPAP45381 313 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 ZNF165P49910 485 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 CLCN4P51793 760 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 TRPC3Q13507 836 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 RAB33AQ14088 237 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 WDR72Q3MJ13 1102 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 HSP90AA4PQ58FG1 418 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 TCP11X2Q5H9J9 407 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 TCERG1LQ5VWI1 586 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 OVOS1Q6IE37 1185 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 KIAA1841Q6NSI8 718 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 PDXDC1Q6P996 788 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 RBM23Q86U06 439 aaKnown RBP13.33□□□□□ -0.28
USP40-205ENST00000430158 OR10T2Q8NGX3 314 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 SPATA18Q8TC71 538 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 PKMYT1Q99640 499 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 BCO2Q9BYV7 579 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 MMRN2Q9H8L6 949 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 RAB20Q9NX57 234 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.33□□□□□ -0.28
USP40-205ENST00000430158 NOTCH4Q99466 2003 aa13.33□□□□□ -0.28
USP40-205ENST00000430158 KCNJ18B7U540 433 aa13.32□□□□□ -0.28
USP40-205ENST00000430158 HCRTO43612 131 aa13.32□□□□□ -0.28
USP40-205ENST00000430158 AFPP02771 609 aaKnown RBP13.32□□□□□ -0.28
USP40-205ENST00000430158 WARSP23381 471 aaKnown RBP13.32□□□□□ -0.28
USP40-205ENST00000430158 OR1D2P34982 312 aa13.32□□□□□ -0.28
USP40-205ENST00000430158 PIK3CAP42336 1068 aa13.32□□□□□ -0.28
USP40-205ENST00000430158 NDUFV1P49821 464 aa13.32□□□□□ -0.28
USP40-205ENST00000430158 ZNF445P59923 1031 aa13.32□□□□□ -0.28
USP40-205ENST00000430158 CREMQ03060 361 aa13.32□□□□□ -0.28
USP40-205ENST00000430158 YWHAHQ04917 246 aaPredicted RBP13.32□□□□□ -0.28
USP40-205ENST00000430158 PDAP1Q13442 181 aaKnown RBP13.32□□□□□ -0.28
USP40-205ENST00000430158 KCNJ12Q14500 433 aa13.32□□□□□ -0.28
USP40-205ENST00000430158 BMS1Q14692 1282 aaKnown RBP13.32□□□□□ -0.28
USP40-205ENST00000430158 CCDC85BQ15834 202 aaPredicted RBP13.32□□□□□ -0.28
USP40-205ENST00000430158 ZNF699Q32M78 642 aa13.32□□□□□ -0.28
USP40-205ENST00000430158 LRRTM3Q86VH5 581 aa13.32□□□□□ -0.28
USP40-205ENST00000430158 FAM114A1Q8IWE2 563 aa13.32□□□□□ -0.28
USP40-205ENST00000430158 TMEM86AQ8N2M4 240 aa13.32□□□□□ -0.28
USP40-205ENST00000430158 AOPEPQ8N6M6 819 aa13.32□□□□□ -0.28
USP40-205ENST00000430158 MAFAQ8NHW3 353 aaPredicted RBP13.32□□□□□ -0.28
USP40-205ENST00000430158 TATDN2Q93075 761 aa13.32□□□□□ -0.28
USP40-205ENST00000430158 FAXDC2Q96IV6 333 aa13.32□□□□□ -0.28
USP40-205ENST00000430158 TMEM209Q96SK2 561 aa13.32□□□□□ -0.28
USP40-205ENST00000430158 MRPL45Q9BRJ2 306 aaKnown RBP13.32□□□□□ -0.28
USP40-205ENST00000430158 TUBGCP2Q9BSJ2 902 aa13.32□□□□□ -0.28
USP40-205ENST00000430158 EMILIN2Q9BXX0 1053 aa13.32□□□□□ -0.28
USP40-205ENST00000430158 SMYD3Q9H7B4 428 aa13.32□□□□□ -0.28
USP40-205ENST00000430158 CBX8Q9HC52 389 aa13.32□□□□□ -0.28
USP40-205ENST00000430158 CLEC1BQ9P126 229 aa13.32□□□□□ -0.28
USP40-205ENST00000430158 LIMA1Q9UHB6 759 aaKnown RBP13.32□□□□□ -0.28
USP40-205ENST00000430158 DSEQ9UL01 958 aa13.32□□□□□ -0.28
USP40-205ENST00000430158 HCFC2Q9Y5Z7 792 aa13.32□□□□□ -0.28
USP40-205ENST00000430158 TTC28Q96AY4 2481 aa13.32□□□□□ -0.28
USP40-205ENST00000430158 ARHGEF37A1IGU5 675 aa13.31□□□□□ -0.28
USP40-205ENST00000430158 WDR27A2RRH5 827 aa13.31□□□□□ -0.28
USP40-205ENST00000430158 GTPBP10A4D1E9 387 aaKnown RBP13.31□□□□□ -0.28
USP40-205ENST00000430158 OR6C75A6NL08 312 aa13.31□□□□□ -0.28
USP40-205ENST00000430158 H7C4K7 107 aa13.31□□□□□ -0.28
USP40-205ENST00000430158 TGM5O43548 720 aa13.31□□□□□ -0.28
USP40-205ENST00000430158 NCK2O43639 380 aa13.31□□□□□ -0.28
USP40-205ENST00000430158 HUS1O60921 280 aa13.31□□□□□ -0.28
USP40-205ENST00000430158 N4BP1O75113 896 aaKnown RBP13.31□□□□□ -0.28
USP40-205ENST00000430158 EPCAMP16422 314 aa13.31□□□□□ -0.28
USP40-205ENST00000430158 LMO2P25791 158 aa13.31□□□□□ -0.28
USP40-205ENST00000430158 NOP14P78316 857 aaKnown RBP13.31□□□□□ -0.28
USP40-205ENST00000430158 MYL7Q01449 175 aa13.31□□□□□ -0.28
USP40-205ENST00000430158 ROR1Q01973 937 aa13.31□□□□□ -0.28
USP40-205ENST00000430158 DLX2Q07687 328 aaPredicted RBP13.31□□□□□ -0.28
USP40-205ENST00000430158 KRT31Q15323 416 aa13.31□□□□□ -0.28
USP40-205ENST00000430158 MAN2A1Q16706 1144 aa13.31□□□□□ -0.28
USP40-205ENST00000430158 TPD52L1Q16890 204 aaPredicted RBP13.31□□□□□ -0.28
USP40-205ENST00000430158 CTXN3Q4LDR2 81 aa13.31□□□□□ -0.28
USP40-205ENST00000430158 ZNF667Q5HYK9 610 aa13.31□□□□□ -0.28
USP40-205ENST00000430158 ZNF280DQ6N043 979 aa13.31□□□□□ -0.28
USP40-205ENST00000430158 UBR7Q8N806 425 aa13.31□□□□□ -0.28
USP40-205ENST00000430158 EHBP1Q8NDI1 1231 aa13.31□□□□□ -0.28
USP40-205ENST00000430158 FEZF2Q8TBJ5 459 aa13.31□□□□□ -0.28
USP40-205ENST00000430158 PABPC5Q96DU9 382 aaKnown RBP13.31□□□□□ -0.28
USP40-205ENST00000430158 NAT10Q9H0A0 1025 aaKnown RBP13.31□□□□□ -0.28
USP40-205ENST00000430158 ZCWPW1Q9H0M4 648 aa13.31□□□□□ -0.28
USP40-205ENST00000430158 CDY1Q9Y6F8 540 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms