RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 SLC6A16Q9GZN6 736 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 ING2Q9H160 280 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 TYW1Q9NV66 732 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 FAM13BQ9NYF5 915 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 SNX7Q9UNH6 387 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 TRPV2Q9Y5S1 764 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 UNC13BO14795 1591 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 SAMD9Q5K651 1589 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 SF3B1O75533 1304 aaKnown RBP eCLIP2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 ITIH6Q6UXX5 1313 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 ELOA3DA6NLF2 546 aaPredicted RBP2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 KIAA0391O15091 583 aaKnown RBP2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 CLEC3AO75596 197 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 AFPP02771 609 aaKnown RBP2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 PLA2G2AP14555 144 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 PTPRAP18433 802 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 TPSB2P20231 275 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 DRD1P21728 446 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 KELP23276 732 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 ALDH4A1P30038 563 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 WDR5P61964 334 aaKnown RBP2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 TRPC3Q13507 836 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 PON2Q15165 354 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 TPSAB1Q15661 275 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 ELOA3BQ3SY89 546 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 FAM46CQ5VWP2 391 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 INTS8Q75QN2 995 aaKnown RBP2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 CATIPQ7Z7H3 387 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 ELOA3Q8NG57 546 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 ERMNQ8TAM6 284 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 TMEM171Q8WVE6 324 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 WASF1Q92558 559 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 C3orf49Q96BT1 292 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 MYO19Q96H55 970 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 FEM1AQ9BSK4 669 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 SRRTQ9BXP5 876 aaKnown RBP2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 RAB34Q9BZG1 259 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 ATG10Q9H0Y0 220 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 DPEP2Q9H4A9 486 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 ERAP1Q9NZ08 941 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 TMEM63CQ9P1W3 806 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 ZMAT5Q9UDW3 170 aaKnown RBP2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 NDRG3Q9UGV2 375 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 SLC45A1Q9Y2W3 748 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 HECTD1Q9ULT8 2610 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 ROBO2Q9HCK4 1378 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 CCDC169A6NNP5 214 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 C2CD4DB7Z1M9 353 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 C1QTNF3-AMACRE9PGA6 284 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 VWA5AO00534 786 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 CLASP2O75122 1294 aaKnown RBP2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 IFNW1P05000 195 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 TPOP07202 933 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 CKMT1AP12532 417 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 SKILP12757 684 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 PDE6AP16499 860 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 CHRNB4P30926 498 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 AKT2P31751 481 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 FOXK1P85037 733 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 HDLBPQ00341 1268 aaKnown RBP2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 CNTN2Q02246 1040 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 PSMD5Q16401 504 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 SKOR2Q2VWA4 1001 aaPredicted RBP2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 POM121L1PQ3SYA9 428 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 HES3Q5TGS1 186 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 SMYD5Q6GMV2 418 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 GRAMD4Q6IC98 578 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 WDR53Q7Z5U6 358 aaPredicted RBP2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 MCPH1Q8NEM0 835 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 BPIFB1Q8TDL5 484 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 ASZ1Q8WWH4 475 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 SHISA4Q96DD7 197 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 ZBED3Q96IU2 234 aaPredicted RBP2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 HIC2Q96JB3 615 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 DUSP23Q9BVJ7 150 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 C14orf93Q9H972 538 aaKnown RBP2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 BARX1Q9HBU1 254 aaPredicted RBP2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 DIAPH3Q9NSV4 1193 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 DLL3Q9NYJ7 618 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 SAMD15Q9P1V8 674 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 FEM1BQ9UK73 627 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 LIMCH1Q9UPQ0 1083 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 PHF24Q9UPV7 400 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 KIF3AQ9Y496 699 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 WDR19Q8NEZ3 1342 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 A0A087WZ62 844 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 CCDC196A0A1B0GTZ2 297 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 LRRIQ4A6NIV6 560 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 E9PAM4 449 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 F8W8V4 182 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 CHMP2AO43633 222 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 GDF9O60383 454 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 RFPL1O75677 317 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 EOMESO95936 686 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 SOX9P48436 509 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 ARL13BQ3SXY8 428 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 TTMPQ5BVD1 217 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 FAM83BQ5T0W9 1011 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 CYP26C1Q6V0L0 522 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 STXBP4Q6ZWJ1 553 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms