RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 TLR3O15455 904 aaKnown RBP10.34□□□□□ -0.75
CD44-206ENST00000415148 ZBED4O75132 1171 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 PEX11AO75192 247 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 PIGRP01833 764 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 CFHP08603 1231 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 T-ENOLP0DO92 83 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 GNAZP19086 355 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 TNNI1P19237 187 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 DSG3P32926 999 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 PIK3CAP42336 1068 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 LIG4P49917 911 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 POLGP54098 1239 aaPredicted RBP10.34□□□□□ -0.75
CD44-206ENST00000415148 FASTKD3Q14CZ7 662 aaKnown RBP10.34□□□□□ -0.75
CD44-206ENST00000415148 TMED2Q15363 201 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 TDRD10Q5VZ19 366 aaKnown RBP10.34□□□□□ -0.75
CD44-206ENST00000415148 TRIM68Q6AZZ1 485 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 CYP4F22Q6NT55 531 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 CAPN12Q6ZSI9 719 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 TAS1R3Q7RTX0 852 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 ALLCQ8N6M5 410 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 MICAL1Q8TDZ2 1067 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 ERP27Q96DN0 273 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 MRRFQ96E11 262 aaKnown RBP10.34□□□□□ -0.75
CD44-206ENST00000415148 TMEM39BQ9GZU3 492 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 GABBR1Q9UBS5 961 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 BRWD3Q6RI45 1802 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 TESPA1A2RU30 521 aaPredicted RBP10.34□□□□□ -0.75
CD44-206ENST00000415148 ENO4A6NNW6 628 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 ATP2A1O14983 1001 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 DCTN3O75935 186 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 CBX6O95503 412 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 ZSCAN5DPP0CG00 497 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 ATP2A2P16615 1042 aaKnown RBP10.34□□□□□ -0.75
CD44-206ENST00000415148 GNA15P30679 374 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 ALDH3A1P30838 453 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 TAP1Q03518 808 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 PDK4Q16654 411 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 PCGF5Q86SE9 256 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 AGGF1Q8N302 714 aaeCLIP10.34□□□□□ -0.75
CD44-206ENST00000415148 INPP5DQ92835 1189 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 SLITRK1Q96PX8 696 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 SMC6Q96SB8 1091 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 C11orf70Q9BRQ4 267 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 C12orf65Q9H3J6 166 aaKnown RBP10.34□□□□□ -0.75
CD44-206ENST00000415148 SAYSD1Q9NPB0 183 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 KLHL11Q9NVR0 708 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 DDX56Q9NY93 547 aaKnown RBP10.34□□□□□ -0.75
CD44-206ENST00000415148 RGS17Q9UGC6 210 aaPredicted RBP10.34□□□□□ -0.75
CD44-206ENST00000415148 AGO2Q9UKV8 859 aaKnown RBP10.34□□□□□ -0.75
CD44-206ENST00000415148 PHTF1Q9UMS5 762 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 CTDP1Q9Y5B0 961 aaPredicted RBP10.34□□□□□ -0.75
CD44-206ENST00000415148 PCDHB4Q9Y5E5 795 aa10.34□□□□□ -0.75
CD44-206ENST00000415148 TMEM191CA6NGB0 347 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 H0Y3Z8 333 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 ZNF862O60290 1169 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 BANF1O75531 89 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 VNN1O95497 513 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 ITGAVP06756 1048 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 TMEM191BP0C7N4 346 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 ETS1P14921 441 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 GCKP35557 465 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 RASSF2P50749 326 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 INHBEP58166 350 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 FAM182AQ5T1J6 154 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 ZNF449Q6P9G9 518 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 C4orf33Q8N1A6 199 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 SLC7A6OSQ96CW6 309 aaPredicted RBP10.33□□□□□ -0.76
CD44-206ENST00000415148 FRMD8P1Q9BZ68 369 aaPredicted RBP10.33□□□□□ -0.76
CD44-206ENST00000415148 MAF1Q9H063 256 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 VPS33BQ9H267 617 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 LRMDAQ9H2I8 198 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 TRABDQ9H4I3 376 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 CYP26B1Q9NR63 512 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 SHOC2Q9UQ13 582 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 ZNF148Q9UQR1 794 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.33□□□□□ -0.76
CD44-206ENST00000415148 STAM2O75886 525 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 CD58P19256 250 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 MMP8P22894 467 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 EPHB2P29323 1055 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 AP3M2P53677 418 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 MOGSQ13724 837 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 TAF11Q15544 211 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 PKN2Q16513 984 aaKnown RBP10.33□□□□□ -0.76
CD44-206ENST00000415148 CAPRIN2Q6IMN6 1127 aaKnown RBP10.33□□□□□ -0.76
CD44-206ENST00000415148 CENPUQ71F23 418 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 FAM13CQ8NE31 585 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 AGBL3Q8NEM8 1001 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 ZNF398Q8TD17 642 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 ZNF483Q8TF39 744 aaPredicted RBP10.33□□□□□ -0.76
CD44-206ENST00000415148 NKD2Q969F2 451 aaPredicted RBP10.33□□□□□ -0.76
CD44-206ENST00000415148 CDHR1Q96JP9 859 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 LRRC37BQ96QE4 947 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 ZNF518BQ9C0D4 1074 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 YIPF3Q9GZM5 350 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 XPNPEP1Q9NQW7 623 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 HOMER2Q9NSB8 354 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 RPL26L1Q9UNX3 145 aaKnown RBP10.33□□□□□ -0.76
CD44-206ENST00000415148 EFR3BQ9Y2G0 817 aa10.33□□□□□ -0.76
CD44-206ENST00000415148 E7ENQ6 273 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms