RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 SAT1P21673 171 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 MLH1P40692 756 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 ACADSBP45954 432 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 NDST1P52848 882 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 SPIRE1Q08AE8 756 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 FSTL1Q12841 308 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 PIGHQ14442 188 aaPredicted RBP9.59□□□□□ -0.87
LIG4-202ENST00000405925 C1orf228Q6PIY5 440 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 IRF2BP1Q8IU81 584 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 REXO1L1PQ8IX06 675 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 PDIK1LQ8N165 341 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 OR5B17Q8NGF7 314 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 CCHCR1Q8TD31 782 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 MGARPQ8TDB4 240 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 ZNF606Q8WXB4 792 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 DPF3Q92784 378 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 TMEM176AQ96HP8 235 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 NIFKQ9BYG3 293 aaKnown RBP9.59□□□□□ -0.87
LIG4-202ENST00000405925 DDX56Q9NY93 547 aaKnown RBP9.59□□□□□ -0.87
LIG4-202ENST00000405925 ST3GAL5Q9UNP4 418 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 SIK3Q9Y2K2 1263 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 SLC45A1Q9Y2W3 748 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 MRFAP1Q9Y605 127 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 CAPN6Q9Y6Q1 641 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 EPHB6O15197 1021 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 DHX15O43143 795 aaKnown RBP9.59□□□□□ -0.87
LIG4-202ENST00000405925 ZBTB24O43167 697 aaPredicted RBP9.59□□□□□ -0.87
LIG4-202ENST00000405925 MAPRE1Q15691 268 aaKnown RBP9.59□□□□□ -0.87
LIG4-202ENST00000405925 KCNA10Q16322 511 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 MIIPQ5JXC2 388 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 HHATQ5VTY9 493 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 NPLOC4Q8TAT6 608 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 DDX27Q96GQ7 796 aaKnown RBP9.59□□□□□ -0.87
LIG4-202ENST00000405925 BTBD6Q96KE9 485 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 ACP6Q9NPH0 428 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 AMACRQ9UHK6 382 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 KIAA1257Q9ULG3 409 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 FAN1Q9Y2M0 1017 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 VIRMAQ69YN4 1812 aaKnown RBP9.59□□□□□ -0.87
LIG4-202ENST00000405925 RPTORQ8N122 1335 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 MYO9BQ13459 2157 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 F5H423 210 aaPredicted RBP9.59□□□□□ -0.87
LIG4-202ENST00000405925 H3BRJ5 948 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 PODXLO00592 558 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 SRGAP2BP0DMP2 458 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 KRT17Q04695 432 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 DEUP1Q05D60 604 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 SF3A3Q12874 501 aaKnown RBP eCLIP9.59□□□□□ -0.87
LIG4-202ENST00000405925 CTXN3Q4LDR2 81 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 SLC7A14Q8TBB6 771 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 TRPC7Q9HCX4 862 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 AIPL1Q9NZN9 384 aa9.59□□□□□ -0.87
LIG4-202ENST00000405925 ALDH2P05091 517 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 GZMAP12544 262 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 NCAM1P13591 858 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 XPAP23025 273 aaPredicted RBP9.58□□□□□ -0.88
LIG4-202ENST00000405925 ZNF131P52739 623 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 CRYBB1P53674 252 aaPredicted RBP9.58□□□□□ -0.88
LIG4-202ENST00000405925 MAP3K10Q02779 954 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 GEN1Q17RS7 908 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 KCTD16Q68DU8 428 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 OVOS1Q6IE37 1185 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 CCDC137Q6PK04 289 aaKnown RBP9.58□□□□□ -0.88
LIG4-202ENST00000405925 FAF2Q96CS3 445 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 EPAS1Q99814 870 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 DDX43Q9NXZ2 648 aaKnown RBP9.58□□□□□ -0.88
LIG4-202ENST00000405925 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.58□□□□□ -0.886e-10■■■■■ 66.7
LIG4-202ENST00000405925 ARHGAP28Q9P2N2 729 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 BARX2Q9UMQ3 279 aaPredicted RBP9.58□□□□□ -0.88
LIG4-202ENST00000405925 SCN7AQ01118 1682 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 KPNA7A9QM74 516 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 IGF2BP3O00425 579 aaKnown RBP eCLIP9.58□□□□□ -0.88
LIG4-202ENST00000405925 INHAP05111 366 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 DNAJB2P25686 324 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 EFHC1Q5JVL4 640 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 CDKL2Q92772 493 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 LPPQ93052 612 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 ACSF2Q96CM8 615 aaPredicted RBP9.58□□□□□ -0.88
LIG4-202ENST00000405925 SLITRK1Q96PX8 696 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 SYT15Q9BQS2 421 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 TRIM7Q9C029 511 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 PLEKHA5Q9HAU0 1116 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 ABCB6Q9NP58 842 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 OSGEPQ9NPF4 335 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 INTUQ9ULD6 942 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 COL2A1P02458 1487 aaPredicted RBP9.58□□□□□ -0.88
LIG4-202ENST00000405925 A0A0B4J269 797 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 SMIM35A0A1B0GVV1 85 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 DPYSL4O14531 572 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 DARSP14868 501 aaKnown RBP9.58□□□□□ -0.88
LIG4-202ENST00000405925 GPD1P21695 349 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 CHRNA3P32297 505 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 SLCO1A2P46721 670 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 BCAT1P54687 386 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 TPI1P60174 286 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 ZNF200P98182 395 aaPredicted RBP9.58□□□□□ -0.88
LIG4-202ENST00000405925 ARHGAP1Q07960 439 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 MDH1BQ5I0G3 518 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 HEATR6Q6AI08 1181 aaKnown RBP9.58□□□□□ -0.88
LIG4-202ENST00000405925 GSPT2Q8IYD1 628 aaKnown RBP9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms