RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 TYMPP19971 482 aa30.88■■■□□ 2.53
HMGB1-205ENST00000399494 LIG4P49917 911 aa30.88■■■□□ 2.53
HMGB1-205ENST00000399494 EPHB3P54753 998 aa30.88■■■□□ 2.53
HMGB1-205ENST00000399494 PLD1Q13393 1074 aa30.88■■■□□ 2.53
HMGB1-205ENST00000399494 SV2BQ7L1I2 683 aa30.88■■■□□ 2.53
HMGB1-205ENST00000399494 SECISBP2LQ93073 1101 aaKnown RBP30.88■■■□□ 2.53
HMGB1-205ENST00000399494 SPATA32Q96LK8 384 aa30.88■■■□□ 2.53
HMGB1-205ENST00000399494 SLITRK6Q9H5Y7 841 aa30.88■■■□□ 2.53
HMGB1-205ENST00000399494 RPF1Q9H9Y2 349 aaKnown RBP30.88■■■□□ 2.53
HMGB1-205ENST00000399494 RCOR1Q9UKL0 485 aa30.88■■■□□ 2.53
HMGB1-205ENST00000399494 PCDHA7Q9UN72 937 aa30.88■■■□□ 2.53
HMGB1-205ENST00000399494 SLC27A5Q9Y2P5 690 aa30.88■■■□□ 2.53
HMGB1-205ENST00000399494 TICRRQ7Z2Z1 1910 aa30.88■■■□□ 2.53
HMGB1-205ENST00000399494 XPOTO43592 962 aaKnown RBP30.87■■■□□ 2.53
HMGB1-205ENST00000399494 TBCAO75347 108 aaKnown RBP30.87■■■□□ 2.53
HMGB1-205ENST00000399494 CHRNB1P11230 501 aa30.87■■■□□ 2.53
HMGB1-205ENST00000399494 TGM1P22735 817 aa30.87■■■□□ 2.53
HMGB1-205ENST00000399494 CCNE1P24864 410 aa30.87■■■□□ 2.53
HMGB1-205ENST00000399494 ANP32AP39687 249 aaKnown RBP30.87■■■□□ 2.53
HMGB1-205ENST00000399494 NRLP54845 237 aa30.87■■■□□ 2.53
HMGB1-205ENST00000399494 LILRA4P59901 499 aa30.87■■■□□ 2.53
HMGB1-205ENST00000399494 MYBPC2Q14324 1141 aa30.87■■■□□ 2.53
HMGB1-205ENST00000399494 SPATA1Q5VX52 437 aa30.87■■■□□ 2.53
HMGB1-205ENST00000399494 OVOS1Q6IE37 1185 aa30.87■■■□□ 2.53
HMGB1-205ENST00000399494 ZHX3Q9H4I2 956 aa30.87■■■□□ 2.53
HMGB1-205ENST00000399494 ALDH1A3P47895 512 aa30.86■■■□□ 2.53
HMGB1-205ENST00000399494 SHC4Q6S5L8 630 aa30.86■■■□□ 2.53
HMGB1-205ENST00000399494 MYCT1Q8N699 235 aa30.86■■■□□ 2.53
HMGB1-205ENST00000399494 ATAD1Q8NBU5 361 aa30.86■■■□□ 2.53
HMGB1-205ENST00000399494 FAM13BQ9NYF5 915 aa30.86■■■□□ 2.53
HMGB1-205ENST00000399494 A0A087X0B3 334 aa30.85■■■□□ 2.53
HMGB1-205ENST00000399494 A0A0B4J269 797 aa30.85■■■□□ 2.53
HMGB1-205ENST00000399494 MTMR11A4FU01 709 aa30.85■■■□□ 2.53
HMGB1-205ENST00000399494 HNRNPDLO14979 420 aaKnown RBP30.85■■■□□ 2.53
HMGB1-205ENST00000399494 CHADO15335 359 aa30.85■■■□□ 2.53
HMGB1-205ENST00000399494 SCP2P22307 547 aa30.85■■■□□ 2.53
HMGB1-205ENST00000399494 ZNF131P52739 623 aa30.85■■■□□ 2.53
HMGB1-205ENST00000399494 FCHO2Q0JRZ9 810 aa30.85■■■□□ 2.53
HMGB1-205ENST00000399494 CHAMP1Q96JM3 812 aa30.85■■■□□ 2.53
HMGB1-205ENST00000399494 SENP8Q96LD8 212 aa30.85■■■□□ 2.53
HMGB1-205ENST00000399494 TMEM209Q96SK2 561 aa30.85■■■□□ 2.53
HMGB1-205ENST00000399494 MKNK1Q9BUB5 465 aa30.85■■■□□ 2.53
HMGB1-205ENST00000399494 CPSF3Q9UKF6 684 aaKnown RBP30.85■■■□□ 2.53
HMGB1-205ENST00000399494 ASB3Q9Y575 518 aa30.85■■■□□ 2.53
HMGB1-205ENST00000399494 CCR3P51677 355 aa30.84■■■□□ 2.53
HMGB1-205ENST00000399494 GAS6Q14393 721 aa30.84■■■□□ 2.53
HMGB1-205ENST00000399494 PPP2R5DQ14738 602 aa30.84■■■□□ 2.53
HMGB1-205ENST00000399494 STXBP5Q5T5C0 1151 aa30.84■■■□□ 2.53
HMGB1-205ENST00000399494 JADE1Q6IE81 842 aa30.84■■■□□ 2.53
HMGB1-205ENST00000399494 SLC39A4Q6P5W5 647 aa30.84■■■□□ 2.53
HMGB1-205ENST00000399494 GAREM2Q75VX8 874 aa30.84■■■□□ 2.53
HMGB1-205ENST00000399494 DNAJB7Q7Z6W7 309 aaPredicted RBP30.84■■■□□ 2.53
HMGB1-205ENST00000399494 GPIHBP1Q8IV16 184 aa30.84■■■□□ 2.53
HMGB1-205ENST00000399494 ARID3BQ8IVW6 561 aaPredicted RBP30.84■■■□□ 2.53
HMGB1-205ENST00000399494 CD302Q8IX05 232 aa30.84■■■□□ 2.53
HMGB1-205ENST00000399494 YAF2Q8IY57 180 aa30.84■■■□□ 2.53
HMGB1-205ENST00000399494 CSGALNACT1Q8TDX6 532 aa30.84■■■□□ 2.53
HMGB1-205ENST00000399494 LEO1Q8WVC0 666 aaPredicted RBP30.84■■■□□ 2.53
HMGB1-205ENST00000399494 PARVGQ9HBI0 331 aa30.84■■■□□ 2.53
HMGB1-205ENST00000399494 PAX3P23760 479 aa30.83■■■□□ 2.53
HMGB1-205ENST00000399494 DYMQ7RTS9 669 aa30.83■■■□□ 2.53
HMGB1-205ENST00000399494 TTC9BQ8N6N2 239 aa30.83■■■□□ 2.53
HMGB1-205ENST00000399494 PSMG2Q969U7 264 aa30.83■■■□□ 2.53
HMGB1-205ENST00000399494 FAM212AQ96EL1 285 aa30.83■■■□□ 2.53
HMGB1-205ENST00000399494 LRRC3BQ96PB8 259 aa30.83■■■□□ 2.53
HMGB1-205ENST00000399494 MSTO1Q9BUK6 570 aa30.83■■■□□ 2.53
HMGB1-205ENST00000399494 SCAND2PQ9GZW5 306 aaPredicted RBP30.83■■■□□ 2.53
HMGB1-205ENST00000399494 HSFX1Q9UBD0 423 aa30.83■■■□□ 2.53
HMGB1-205ENST00000399494 K7ENM7 598 aa30.82■■■□□ 2.52
HMGB1-205ENST00000399494 PIRO00625 290 aa30.82■■■□□ 2.52
HMGB1-205ENST00000399494 TRAK2O60296 914 aa30.82■■■□□ 2.52
HMGB1-205ENST00000399494 SOAT2O75908 522 aa30.82■■■□□ 2.52
HMGB1-205ENST00000399494 SDHBP21912 280 aa30.82■■■□□ 2.52
HMGB1-205ENST00000399494 CXCL12P48061 93 aa30.82■■■□□ 2.52
HMGB1-205ENST00000399494 C9orf57Q5W0N0 161 aa30.82■■■□□ 2.52
HMGB1-205ENST00000399494 ARMCX5Q6P1M9 558 aa30.82■■■□□ 2.52
HMGB1-205ENST00000399494 CELF5Q8N6W0 485 aaKnown RBP30.82■■■□□ 2.52
HMGB1-205ENST00000399494 DHX58Q96C10 678 aa30.82■■■□□ 2.52
HMGB1-205ENST00000399494 FIZ1Q96SL8 496 aa30.82■■■□□ 2.52
HMGB1-205ENST00000399494 C8orf33Q9H7E9 229 aaPredicted RBP30.82■■■□□ 2.52
HMGB1-205ENST00000399494 ANO9A1A5B4 782 aa30.81■■■□□ 2.52
HMGB1-205ENST00000399494 ODC1P11926 461 aa30.81■■■□□ 2.52
HMGB1-205ENST00000399494 ATXN1P54253 815 aaKnown RBP30.81■■■□□ 2.52
HMGB1-205ENST00000399494 SATB1Q01826 763 aa30.81■■■□□ 2.52
HMGB1-205ENST00000399494 RESP18Q5W5W9 173 aa30.81■■■□□ 2.52
HMGB1-205ENST00000399494 IQUBQ8NA54 791 aa30.81■■■□□ 2.52
HMGB1-205ENST00000399494 MSANTD3Q96H12 275 aa30.81■■■□□ 2.52
HMGB1-205ENST00000399494 ATXN3LQ9H3M9 355 aa30.81■■■□□ 2.52
HMGB1-205ENST00000399494 CUEDC2Q9H467 287 aa30.81■■■□□ 2.52
HMGB1-205ENST00000399494 PARD6AQ9NPB6 346 aa30.81■■■□□ 2.52
HMGB1-205ENST00000399494 PRR5-ARHGAP8B1AHC4 643 aa30.8■■■□□ 2.52
HMGB1-205ENST00000399494 CYP11A1P05108 521 aa30.8■■■□□ 2.52
HMGB1-205ENST00000399494 SOX9P48436 509 aa30.8■■■□□ 2.52
HMGB1-205ENST00000399494 KPNA1P52294 538 aaPredicted RBP30.8■■■□□ 2.52
HMGB1-205ENST00000399494 ARHGAP8P85298 464 aa30.8■■■□□ 2.52
HMGB1-205ENST00000399494 GTF2BQ00403 316 aa30.8■■■□□ 2.52
HMGB1-205ENST00000399494 WDR44Q5JSH3 913 aa30.8■■■□□ 2.52
HMGB1-205ENST00000399494 C1orf228Q6PIY5 440 aa30.8■■■□□ 2.52
HMGB1-205ENST00000399494 SPEM1Q8N4L4 309 aa30.8■■■□□ 2.52
HMGB1-205ENST00000399494 OR10T2Q8NGX3 314 aa30.8■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms