RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 PDP2Q9P2J9 529 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 TBKBP1A7MCY6 615 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 CTDNEP1O95476 244 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 MYL2P10916 166 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 EIF2B2P49770 351 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 RBP5P82980 135 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 KRR1Q13601 381 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 TTC39BQ5VTQ0 682 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 AFG1LQ8WV93 481 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 E2F7Q96AV8 911 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 MANSC1Q9H8J5 431 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 USP31Q70CQ4 1352 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 CNTNAP5Q8WYK1 1306 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 EFCAB14O75071 495 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 LCP1P13796 627 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 DEPDC1Q5TB30 811 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 CYB5D1Q6P9G0 228 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 RRM2BQ7LG56 351 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 CDR2LQ86X02 465 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 MYCBPAPQ8TBZ2 947 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 OTUB1Q96FW1 271 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 SPATA33Q96N06 139 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 NR1H4Q96RI1 486 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 TMEM8AQ9HCN3 771 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 DFFAO00273 331 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 C21orf2O43822 256 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 RAD51Q06609 339 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 RMDN1Q96DB5 314 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 PPP1R2P1Q96PQ5 205 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 PNKPQ96T60 521 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 UBE2OQ9C0C9 1292 aaKnown RBP10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 VPS33BQ9H267 617 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 GTF3C4Q9UKN8 822 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 CDV3Q9UKY7 258 aaKnown RBP10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 TSC22D2O75157 780 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 SULT1E1P49888 294 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 STAT5BP51692 787 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 ITIH4Q14624 930 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 TAGAPQ8N103 731 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 SH3TC2Q8TF17 1288 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 DNAJC7Q99615 494 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 NEUROG2Q9H2A3 272 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 ARHGEF38Q9NXL2 777 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 CDYLQ9Y232 598 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 AXIN2Q9Y2T1 843 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 CRB1P82279 1406 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 AIM2O14862 343 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 TBC1D4O60343 1298 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 RBP3P10745 1247 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 RPA1P27694 616 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 NNMTP40261 264 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 KCNJ1P48048 391 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 PLIN5Q00G26 463 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 FAM182BQ5T319 152 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 SLC13A5Q86YT5 568 aaPredicted RBP10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 TPCN2Q8NHX9 752 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 URGCPQ8TCY9 931 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 TASP1Q9H6P5 420 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 NYAP2Q9P242 653 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 AGAP1Q9UPQ3 857 aa10.71□□□□□ -0.69
LIMCH1-203ENST00000396595 GLI2P10070 1586 aa10.71□□□□□ -0.7
LIMCH1-203ENST00000396595 FAM200BP0CF97 657 aa10.71□□□□□ -0.7
LIMCH1-203ENST00000396595 MAPK7Q13164 816 aa10.71□□□□□ -0.7
LIMCH1-203ENST00000396595 KRT72Q14CN4 511 aa10.71□□□□□ -0.7
LIMCH1-203ENST00000396595 C6orf10Q5SRN2 563 aa10.71□□□□□ -0.7
LIMCH1-203ENST00000396595 PPIL6Q8IXY8 311 aa10.71□□□□□ -0.7
LIMCH1-203ENST00000396595 CLEC4FQ8N1N0 589 aa10.71□□□□□ -0.7
LIMCH1-203ENST00000396595 AGAP3Q96P47 875 aa10.71□□□□□ -0.7
LIMCH1-203ENST00000396595 MED15Q96RN5 788 aa10.71□□□□□ -0.7
LIMCH1-203ENST00000396595 ZSCAN9O15535 394 aaPredicted RBP10.71□□□□□ -0.7
LIMCH1-203ENST00000396595 GJA8P48165 433 aa10.71□□□□□ -0.7
LIMCH1-203ENST00000396595 HSPA13P48723 471 aa10.71□□□□□ -0.7
LIMCH1-203ENST00000396595 KLK7P49862 253 aa10.71□□□□□ -0.7
LIMCH1-203ENST00000396595 ANO4Q32M45 955 aa10.71□□□□□ -0.7
LIMCH1-203ENST00000396595 LRRC34Q8IZ02 419 aa10.71□□□□□ -0.7
LIMCH1-203ENST00000396595 STX19Q8N4C7 294 aa10.71□□□□□ -0.7
LIMCH1-203ENST00000396595 SPATA18Q8TC71 538 aa10.71□□□□□ -0.7
LIMCH1-203ENST00000396595 PTPRN2Q92932 1015 aa10.71□□□□□ -0.7
LIMCH1-203ENST00000396595 DLGAP2Q9P1A6 1054 aa10.71□□□□□ -0.7
LIMCH1-203ENST00000396595 L1RE1Q9UN81 338 aa10.71□□□□□ -0.7
LIMCH1-203ENST00000396595 RALAP11233 206 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 ACOT2P49753 483 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 GEMIN4P57678 1058 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 GRIN1Q05586 938 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 Q4G0T1 1027 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 AASDHQ4L235 1098 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 FIGNQ5HY92 759 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 PRPF39Q86UA1 669 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 CASKIN2Q8WXE0 1202 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 ZNF668Q96K58 619 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 TUBA8Q9NY65 449 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 PJA2O43164 708 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 TLR2O60603 784 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 CST8O60676 142 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 HLA-DRAP01903 254 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 POLBP06746 335 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 PDAP1Q13442 181 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 CNGA2Q16280 664 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 CALML6Q8TD86 181 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms