RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 ZNF677Q86XU0 584 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 SLC25A41Q8N5S1 370 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 TMEM117Q9H0C3 514 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 MAN1C1Q9NR34 630 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 AIM2O14862 343 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 SOAT2O75908 522 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 SNRNP35Q16560 246 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 LONRF1Q17RB8 773 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 TRAF7Q6Q0C0 670 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.35□□□□□ -0.278e-7■■■■■ 52
CCDC88C-204ENST00000389857 MRPL48Q96GC5 212 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 VIPAS39Q9H9C1 493 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 LIMA1Q9UHB6 759 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 CEP170Q5SW79 1584 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 C19orf81C9J6K1 198 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 VWA5AO00534 786 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 NBNO60934 754 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 KRT75O95678 551 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 GPD1P21695 349 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 PLOD1Q02809 727 aaPredicted RBP13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 CENPCQ03188 943 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 KLC1Q07866 573 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 SYCP2LQ5T4T6 812 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 ANKS6Q68DC2 871 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 RBBP8NLQ8NC74 664 aaPredicted RBP13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 ZNF473Q8WTR7 871 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 CINPQ9BW66 212 aaPredicted RBP13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 RPS6KA5O75582 802 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 C4BPBP20851 252 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 SERPINB1P30740 379 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 TTLL9Q3SXZ7 439 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 PRPF39Q86UA1 669 aaKnown RBP13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 THTPAQ9BU02 230 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 ROPN1BQ9BZX4 212 aaPredicted RBP13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 ROPN1Q9HAT0 212 aaPredicted RBP13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 POLE3Q9NRF9 147 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 SPASTQ9UBP0 616 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 SESN1Q9Y6P5 492 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 ITIH6Q6UXX5 1313 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 PP2D1A8MPX8 630 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 TEX33O43247 280 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 RASSF9O75901 435 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 RHOBTB1O94844 696 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 MGAT5BQ3V5L5 792 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 PARK7Q99497 189 aaKnown RBP13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 ANKRD65E5RJM6 399 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 RNF103O00237 685 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 PDGFRBP09619 1106 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 KCNA3P22001 575 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 SOX6P35712 828 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 ACOT2P49753 483 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 NAPEPLDQ6IQ20 393 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 C7orf25Q9BPX7 421 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 EXOSC4Q9NPD3 245 aaKnown RBP13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 EIF3LQ9Y262 564 aaKnown RBP13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 ALOX15P16050 662 aaPredicted RBP13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 NUP62P37198 522 aaPredicted RBP13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 GOLGA7BQ2TAP0 167 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.34□□□□□ -0.276e-7■■■■□ 26.5
CCDC88C-204ENST00000389857 WEE2P0C1S8 567 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 SNAPC2Q13487 334 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 CACHD1Q5VU97 1274 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 C11orf96Q7Z7L8 435 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 SPATA18Q8TC71 538 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 TMEM143Q96AN5 459 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 TUBGCP3Q96CW5 907 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 MS4A14Q96JA4 679 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 SMARCAL1Q9NZC9 954 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 FHOD1Q9Y613 1164 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 HECW2Q9P2P5 1572 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 MAGI3Q5TCQ9 1506 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 FAM47E-STBD1D6RA91 191 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 RAB14P61106 215 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 KBTBD12Q3ZCT8 623 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 TDRD10Q5VZ19 366 aaKnown RBP13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 C3orf62Q6ZUJ4 267 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 IPMKQ8NFU5 416 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 NEDD1Q8NHV4 660 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 ECSITQ9BQ95 431 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 LRRC1Q9BTT6 524 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 DNAJC5BQ9UF47 199 aa13.34□□□□□ -0.27
CCDC88C-204ENST00000389857 ALBP02768 609 aa13.33□□□□□ -0.27
CCDC88C-204ENST00000389857 GUCY1A2P33402 732 aa13.33□□□□□ -0.27
CCDC88C-204ENST00000389857 C19orf60Q96EN9 201 aa13.33□□□□□ -0.27
CCDC88C-204ENST00000389857 IMPAD1Q9NX62 359 aa13.33□□□□□ -0.27
CCDC88C-204ENST00000389857 PNPLA7Q6ZV29 1317 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 GUCA1AP43080 201 aaPredicted RBP13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 HMGCS2P54868 508 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 EMC2Q15006 297 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 FAM83EQ2M2I3 478 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 SGO1Q5FBB7 561 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 ARHGAP17Q68EM7 881 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 GLB1LQ6UWU2 654 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 TFB1MQ8WVM0 346 aaKnown RBP13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 DMAP1Q9NPF5 467 aaPredicted RBP13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 TUBGCP4Q9UGJ1 667 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 TBX3O15119 743 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 DYRK3O43781 588 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 CHRM3P20309 590 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms