RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 LRRC43Q8N309 656 aa15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 OR6Y1Q8NGX8 325 aa15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 SLC16A10Q8TF71 515 aa15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 SLC35B4Q969S0 331 aa15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 CFAP57Q96MR6 1250 aa15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 TUBGCP4Q9UGJ1 667 aa15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 MTO1Q9Y2Z2 717 aaKnown RBP15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 NEU2Q9Y3R4 380 aa15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 ZNF189O75820 626 aaPredicted RBP15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 MAN1A1P33908 653 aa15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 NT5C2P49902 561 aa15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 ERFP50548 548 aa15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 GABPAQ06546 454 aa15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 UBE2SQ16763 222 aa15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 CC2D2BQ6DHV5 1058 aa15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 APOBEC3HQ6NTF7 200 aaKnown RBP15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 RASSF3Q86WH2 238 aa15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 TTLL6Q8N841 843 aa15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 CCDC110Q8TBZ0 833 aa15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 SPIRE2Q8WWL2 714 aa15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 RBM15Q96T37 977 aaKnown RBP eCLIP15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 CYTH2Q99418 400 aa15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 INTS2Q9H0H0 1204 aaKnown RBP15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 APEX2Q9UBZ4 518 aa15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 WDR37Q9Y2I8 494 aa15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 SH3GLB1Q9Y371 365 aa15.45■□□□□ 0.06
VPS9D1-201ENST00000389386 LRRC37AA6NMS7 1700 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 LTBP1Q14766 1721 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 WDR91A4D1P6 747 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 B2RBV5 119 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 MARCH6O60337 910 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 ZBED4O75132 1171 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 ADCY7P51828 1080 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 EMP3P54852 163 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 RASA3Q14644 834 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 BMT2Q1RMZ1 405 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 TMCO4Q5TGY1 634 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 TTC7BQ86TV6 843 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 TMPRSS6Q8IU80 811 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 SCUBE1Q8IWY4 988 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 GRK7Q8WTQ7 553 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 MAK16Q9BXY0 300 aaKnown RBP15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 GPAMQ9HCL2 828 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 ATMINO43313 823 aaPredicted RBP15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 UQCRBP14927 111 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 ADRA1DP25100 572 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 POLD1P28340 1107 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 GTF2H1P32780 548 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 SHMT1P34896 483 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 TNNI2P48788 182 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 ASPHQ12797 758 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 ANKS1BQ7Z6G8 1248 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 FBXO27Q8NI29 283 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 TMEM120AQ9BXJ8 343 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 DCLK3Q9C098 648 aa15.44■□□□□ 0.06
VPS9D1-201ENST00000389386 LRRN2O75325 713 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 SMARCA1P28370 1054 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 KCNA1Q09470 495 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 CYLC2Q14093 348 aaPredicted RBP15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 CBWD6Q4V339 395 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 CBWD3Q5JTY5 395 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 CBWD5Q5RIA9 395 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 IZUMO3Q5VZ72 239 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 FAM91A1Q658Y4 838 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 ADGRG6Q86SQ4 1221 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 MAP7D3Q8IWC1 876 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 FAM186BQ8IYM0 893 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 SMYD1Q8NB12 490 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 DIS3LQ8TF46 1054 aaKnown RBP15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 SNRNP27Q8WVK2 155 aaKnown RBP15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 TEKT1Q969V4 418 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 PRICKLE1Q96MT3 831 aaPredicted RBP15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 USP29Q9HBJ7 922 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 PAIP2BQ9ULR5 123 aaKnown RBP15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 QSER1Q2KHR3 1735 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 FCHO1O14526 889 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 SUPT3HO75486 399 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 CIB2O75838 187 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 VCLP18206 1134 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 CRKP46108 304 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 CPA2P48052 419 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 GALK1P51570 392 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 SNAP25P60880 206 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 PHEXP78562 749 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 MSLNQ13421 630 aaPredicted RBP15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 SFT2D3Q587I9 215 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 ZNF746Q6NUN9 644 aaPredicted RBP15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 RBM44Q6ZP01 1051 aaKnown RBP15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 BBOF1Q8ND07 529 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 GAB3Q8WWW8 586 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 REEP2Q9BRK0 252 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 HERPUD2Q9BSE4 406 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 PLA2G4CQ9UP65 541 aa15.43■□□□□ 0.06
VPS9D1-201ENST00000389386 PPP1R11O60927 126 aaPredicted RBP15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 MED24O75448 989 aa15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 TM7SF2O76062 418 aa15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 VIL1P09327 827 aaKnown RBP15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 PLS3P13797 630 aa15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 TBL3Q12788 808 aaKnown RBP15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 TMED1Q13445 227 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms