RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 CCL16O15467 120 aa14.35□□□□□ -0.11
VPS28-202ENST00000377348 CLSTN1O94985 981 aa14.35□□□□□ -0.11
VPS28-202ENST00000377348 VNN2O95498 520 aa14.35□□□□□ -0.11
VPS28-202ENST00000377348 ATF2P15336 505 aa14.35□□□□□ -0.11
VPS28-202ENST00000377348 SP100P23497 879 aaPredicted RBP14.35□□□□□ -0.11
VPS28-202ENST00000377348 ADCY1Q08828 1119 aa14.35□□□□□ -0.11
VPS28-202ENST00000377348 NCOA4Q13772 614 aa14.35□□□□□ -0.11
VPS28-202ENST00000377348 CBX2Q14781 532 aaPredicted RBP14.35□□□□□ -0.11
VPS28-202ENST00000377348 DPCR1Q3MIW9 517 aa14.35□□□□□ -0.11
VPS28-202ENST00000377348 WDR72Q3MJ13 1102 aa14.35□□□□□ -0.11
VPS28-202ENST00000377348 ZACNQ401N2 412 aa14.35□□□□□ -0.11
VPS28-202ENST00000377348 PPM1LQ5SGD2 360 aa14.35□□□□□ -0.11
VPS28-202ENST00000377348 ELMSAN1Q6PJG2 1045 aa14.35□□□□□ -0.11
VPS28-202ENST00000377348 C15orf39Q6ZRI6 1047 aa14.35□□□□□ -0.11
VPS28-202ENST00000377348 ADGRF2Q8IZF7 708 aa14.35□□□□□ -0.11
VPS28-202ENST00000377348 TOP6BLQ8N6T0 577 aa14.35□□□□□ -0.11
VPS28-202ENST00000377348 CMASQ8NFW8 434 aaPredicted RBP14.35□□□□□ -0.11
VPS28-202ENST00000377348 MED15Q96RN5 788 aa14.35□□□□□ -0.11
VPS28-202ENST00000377348 MMS19Q96T76 1030 aa14.35□□□□□ -0.11
VPS28-202ENST00000377348 CYP4F11Q9HBI6 524 aa14.35□□□□□ -0.11
VPS28-202ENST00000377348 ZDHHC7Q9NXF8 308 aa14.35□□□□□ -0.11
VPS28-202ENST00000377348 POLIQ9UNA4 740 aa14.35□□□□□ -0.11
VPS28-202ENST00000377348 LRRN2O75325 713 aa14.34□□□□□ -0.11
VPS28-202ENST00000377348 HLA-DRAP01903 254 aa14.34□□□□□ -0.11
VPS28-202ENST00000377348 ACAT1P24752 427 aaKnown RBP14.34□□□□□ -0.11
VPS28-202ENST00000377348 PIK3CAP42336 1068 aa14.34□□□□□ -0.11
VPS28-202ENST00000377348 CCDC142Q17RM4 750 aa14.34□□□□□ -0.11
VPS28-202ENST00000377348 ZNF699Q32M78 642 aa14.34□□□□□ -0.11
VPS28-202ENST00000377348 SLC39A12Q504Y0 691 aa14.34□□□□□ -0.11
VPS28-202ENST00000377348 DCAF17Q5H9S7 520 aaPredicted RBP14.34□□□□□ -0.11
VPS28-202ENST00000377348 ATAT1Q5SQI0 421 aa14.34□□□□□ -0.11
VPS28-202ENST00000377348 TCERG1LQ5VWI1 586 aa14.34□□□□□ -0.11
VPS28-202ENST00000377348 TPGS2Q68CL5 300 aa14.34□□□□□ -0.11
VPS28-202ENST00000377348 SPOPLQ6IQ16 392 aa14.34□□□□□ -0.11
VPS28-202ENST00000377348 LIMS2Q7Z4I7 341 aa14.34□□□□□ -0.11
VPS28-202ENST00000377348 LRRTM3Q86VH5 581 aa14.34□□□□□ -0.11
VPS28-202ENST00000377348 THEM5Q8N1Q8 247 aa14.34□□□□□ -0.11
VPS28-202ENST00000377348 TAS1R2Q8TE23 839 aa14.34□□□□□ -0.11
VPS28-202ENST00000377348 KBTBD7Q8WVZ9 684 aa14.34□□□□□ -0.11
VPS28-202ENST00000377348 SMG7Q92540 1137 aaKnown RBP14.34□□□□□ -0.11
VPS28-202ENST00000377348 SYAP1Q96A49 352 aaPredicted RBP14.34□□□□□ -0.11
VPS28-202ENST00000377348 RIPOR3Q96MK2 946 aa14.34□□□□□ -0.11
VPS28-202ENST00000377348 MRPL45Q9BRJ2 306 aaKnown RBP14.34□□□□□ -0.11
VPS28-202ENST00000377348 PI4K2AQ9BTU6 479 aa14.34□□□□□ -0.11
VPS28-202ENST00000377348 PRKD2Q9BZL6 878 aa14.34□□□□□ -0.11
VPS28-202ENST00000377348 ZCWPW1Q9H0M4 648 aa14.34□□□□□ -0.11
VPS28-202ENST00000377348 CRISPLD1Q9H336 500 aa14.34□□□□□ -0.11
VPS28-202ENST00000377348 CD320Q9NPF0 282 aa14.34□□□□□ -0.11
VPS28-202ENST00000377348 DDX43Q9NXZ2 648 aaKnown RBP14.34□□□□□ -0.11
VPS28-202ENST00000377348 NXF1Q9UBU9 619 aaKnown RBP14.34□□□□□ -0.11
VPS28-202ENST00000377348 AFF4Q9UHB7 1163 aaKnown RBP14.34□□□□□ -0.11
VPS28-202ENST00000377348 NCOR1O75376 2440 aa14.34□□□□□ -0.11
VPS28-202ENST00000377348 MTCL1Q9Y4B5 1905 aaKnown RBP14.33□□□□□ -0.11
VPS28-202ENST00000377348 MTMR11A4FU01 709 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 PRRG1O14668 218 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 STAU1O95793 577 aaKnown RBP14.33□□□□□ -0.12
VPS28-202ENST00000377348 MBD3O95983 291 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 LMO2P25791 158 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 ATICP31939 592 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 ELF1P32519 619 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 MTHFRP42898 656 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 RAP1GAPP47736 663 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 NLRP12P59046 1061 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 MCCD1P59942 119 aaPredicted RBP14.33□□□□□ -0.12
VPS28-202ENST00000377348 TNNC1P63316 161 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 ZP2Q05996 745 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 GPR17Q13304 367 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 CCDC40Q4G0X9 1142 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 SCARA5Q6ZMJ2 495 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 CCDC149Q6ZUS6 474 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 FILIP1Q7Z7B0 1213 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 ADHFE1Q8IWW8 467 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 TCEAL8Q8IYN2 117 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 TMEM86AQ8N2M4 240 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 TTC9BQ8N6N2 239 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 MLKLQ8NB16 471 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 ATAD1Q8NBU5 361 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 RPGRIP1Q96KN7 1286 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 CEP63Q96MT8 703 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 PHF7Q9BWX1 381 aaPredicted RBP14.33□□□□□ -0.12
VPS28-202ENST00000377348 SRRTQ9BXP5 876 aaKnown RBP14.33□□□□□ -0.12
VPS28-202ENST00000377348 OXCT2Q9BYC2 517 aaPredicted RBP14.33□□□□□ -0.12
VPS28-202ENST00000377348 SMYD3Q9H7B4 428 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 PIDD1Q9HB75 910 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 TMEM8AQ9HCN3 771 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 TMLHEQ9NVH6 421 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 ARMCX3Q9UH62 379 aaPredicted RBP14.33□□□□□ -0.12
VPS28-202ENST00000377348 RWDD2AQ9UIY3 292 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 SLC27A5Q9Y2P5 690 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 NME7Q9Y5B8 376 aa14.33□□□□□ -0.12
VPS28-202ENST00000377348 GABRDO14764 452 aa14.32□□□□□ -0.12
VPS28-202ENST00000377348 SOAT2O75908 522 aa14.32□□□□□ -0.12
VPS28-202ENST00000377348 PAPLNO95428 1278 aa14.32□□□□□ -0.12
VPS28-202ENST00000377348 HNRNPA1P09651 372 aaKnown RBP eCLIP14.32□□□□□ -0.12
VPS28-202ENST00000377348 WARSP23381 471 aaKnown RBP14.32□□□□□ -0.12
VPS28-202ENST00000377348 MXI1P50539 228 aa14.32□□□□□ -0.12
VPS28-202ENST00000377348 CDH8P55286 799 aa14.32□□□□□ -0.12
VPS28-202ENST00000377348 NTHL1P78549 312 aa14.32□□□□□ -0.12
VPS28-202ENST00000377348 MYL7Q01449 175 aa14.32□□□□□ -0.12
VPS28-202ENST00000377348 ENPEPQ07075 957 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms