RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 RBM23Q86U06 439 aaKnown RBP12.16□□□□□ -0.46
SYNE1-204ENST00000367248 SRRM1Q8IYB3 904 aaKnown RBP12.16□□□□□ -0.46
SYNE1-204ENST00000367248 HS6ST3Q8IZP7 471 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 WDR48Q8TAF3 677 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 SOCS4Q8WXH5 440 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 TAF1DQ9H5J8 278 aaPredicted RBP12.16□□□□□ -0.46
SYNE1-204ENST00000367248 CERS4Q9HA82 394 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 MKRN4PQ13434 485 aaPredicted RBP12.16□□□□□ -0.46
SYNE1-204ENST00000367248 SLC5A5Q92911 643 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 MRFAP1Q9Y605 127 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 SLC25A13Q9UJS0 675 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 ATXN3P54252 364 aaPredicted RBP12.16□□□□□ -0.46
SYNE1-204ENST00000367248 TMPRSS15P98073 1019 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 SYTL3Q4VX76 610 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 CCDC38Q502W7 563 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 CATSPERGQ6ZRH7 1159 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 REPS2Q8NFH8 660 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 SRPK1Q96SB4 655 aaKnown RBP12.16□□□□□ -0.46
SYNE1-204ENST00000367248 PDGFDQ9GZP0 370 aaPredicted RBP12.16□□□□□ -0.46
SYNE1-204ENST00000367248 ITSN1Q15811 1721 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 RIC1Q4ADV7 1423 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 A0A087WUV0 522 aaPredicted RBP12.15□□□□□ -0.46
SYNE1-204ENST00000367248 C3orf70A6NLC5 250 aaPredicted RBP12.15□□□□□ -0.46
SYNE1-204ENST00000367248 EEF2KO00418 725 aaKnown RBP12.15□□□□□ -0.46
SYNE1-204ENST00000367248 TAF2Q6P1X5 1199 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 SLC25A41Q8N5S1 370 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 SPIRE2Q8WWL2 714 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 PNMA5Q96PV4 448 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 WDR18Q9BV38 432 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 MTMR12Q9C0I1 747 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 RANBP17Q9H2T7 1088 aaKnown RBP12.15□□□□□ -0.46
SYNE1-204ENST00000367248 ALG6Q9Y672 507 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 PNMA6AP0CW24 399 aaPredicted RBP12.15□□□□□ -0.46
SYNE1-204ENST00000367248 GPD1P21695 349 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 KLK7P49862 253 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 ASAP3Q8TDY4 903 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 KIAA1257Q9ULG3 409 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 SMIM22K7EJ46 135 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 BAG2O95816 211 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 AMHP03971 560 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 COMTP21964 271 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 OCRLQ01968 901 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 IFT88Q13099 833 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 MFSD10Q14728 455 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 ZBTB41Q5SVQ8 909 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 NUGGCQ68CJ6 796 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 LRRC43Q8N309 656 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 USP20Q9Y2K6 914 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 SLITRK3O94933 977 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 CYP3A4P08684 503 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 ST3GAL1Q11201 340 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 SPARCL1Q14515 664 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 FOXN3O00409 490 aaPredicted RBP12.15□□□□□ -0.46
SYNE1-204ENST00000367248 INHBEP58166 350 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 GRIK4Q16099 956 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 BOLA3Q53S33 107 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 PALB2Q86YC2 1186 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 SEMA6BQ9H3T3 888 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 SMPD4Q9NXE4 827 aa12.15□□□□□ -0.46
SYNE1-204ENST00000367248 KPNA7A9QM74 516 aa12.15□□□□□ -0.47
SYNE1-204ENST00000367248 LAMTOR4Q0VGL1 99 aa12.15□□□□□ -0.47
SYNE1-204ENST00000367248 IMPG1Q17R60 797 aa12.15□□□□□ -0.47
SYNE1-204ENST00000367248 TAS1R2Q8TE23 839 aa12.15□□□□□ -0.47
SYNE1-204ENST00000367248 FBXO32Q969P5 355 aa12.15□□□□□ -0.47
SYNE1-204ENST00000367248 OSBPL8Q9BZF1 889 aa12.15□□□□□ -0.47
SYNE1-204ENST00000367248 RSAD1Q9HA92 442 aa12.15□□□□□ -0.47
SYNE1-204ENST00000367248 GSTA4O15217 222 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 ATMINO43313 823 aaPredicted RBP12.14□□□□□ -0.47
SYNE1-204ENST00000367248 PRKAR2AP13861 404 aaKnown RBP12.14□□□□□ -0.47
SYNE1-204ENST00000367248 SESN2P58004 480 aaPredicted RBP12.14□□□□□ -0.47
SYNE1-204ENST00000367248 OTOP1Q7RTM1 612 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 GSPT2Q8IYD1 628 aaKnown RBP12.14□□□□□ -0.47
SYNE1-204ENST00000367248 CARNMT1Q8N4J0 409 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 TTC8Q8TAM2 541 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 CYB561D2O14569 222 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 CTIFO43310 598 aaKnown RBP12.14□□□□□ -0.47
SYNE1-204ENST00000367248 VSIG10LQ86VR7 867 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 WDR75Q8IWA0 830 aaKnown RBP12.14□□□□□ -0.47
SYNE1-204ENST00000367248 ATPAF2Q8N5M1 289 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 CAPNS2Q96L46 248 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 MAGEB10Q96LZ2 347 aaPredicted RBP12.14□□□□□ -0.47
SYNE1-204ENST00000367248 CHORDC1Q9UHD1 332 aaPredicted RBP12.14□□□□□ -0.47
SYNE1-204ENST00000367248 AKAP3O75969 853 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 THP07101 528 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 COBLL1Q53SF7 1204 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 RIOX2Q8IUF8 465 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 DDI1Q8WTU0 396 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 GNGT2O14610 69 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 TBC1D12O60347 775 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 VDRP11473 427 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 NCF2P19878 526 aaPredicted RBP12.14□□□□□ -0.47
SYNE1-204ENST00000367248 GPATCH11Q8N954 259 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 COPS5Q92905 334 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 THOC1Q96FV9 657 aaKnown RBP12.14□□□□□ -0.47
SYNE1-204ENST00000367248 ZCWPW1Q9H0M4 648 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 SCAMP3O14828 347 aaKnown RBP12.14□□□□□ -0.47
SYNE1-204ENST00000367248 CCDC33Q8N5R6 958 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 CD99L2Q8TCZ2 262 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 CYTH2Q99418 400 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 AP1G2O75843 785 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms