RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 TFDP1Q14186 410 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 ZACNQ401N2 412 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 RFX8Q6ZV50 586 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 TRABD2AQ86V40 505 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 RHPN2Q8IUC4 686 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 BBOF1Q8ND07 529 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 HAPLN2Q9GZV7 340 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 CHKBQ9Y259 395 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 WNT10BO00744 389 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 TJP3O95049 919 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 LYPLA2O95372 231 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 ATP2A2P16615 1042 aaKnown RBP12.8□□□□□ -0.36
CLIP3-201ENST00000360535 TNFSF9P41273 254 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 ACTR2P61160 394 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 NCOA4Q13772 614 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 ENOSF1Q7L5Y1 443 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 LONP2Q86WA8 852 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 LRRN4Q8WUT4 740 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 MAML1Q92585 1016 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 PLCD4Q9BRC7 762 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 MAK16Q9BXY0 300 aaKnown RBP12.8□□□□□ -0.36
CLIP3-201ENST00000360535 IMPG2Q9BZV3 1241 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 JPH1Q9HDC5 661 aaPredicted RBP12.8□□□□□ -0.36
CLIP3-201ENST00000360535 ARHGEF3Q9NR81 526 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 PARVAQ9NVD7 372 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 TJP2Q9UDY2 1190 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 DOCK5Q9H7D0 1870 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 RBBP6Q7Z6E9 1792 aaKnown RBP12.8□□□□□ -0.36
CLIP3-201ENST00000360535 TTLL13PA6NNM8 815 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 DNALI1O14645 258 aaPredicted RBP12.8□□□□□ -0.36
CLIP3-201ENST00000360535 PSTPIP1O43586 416 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 DGAT1O75907 488 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 MAP3K6O95382 1288 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 C4BPAP04003 597 aaKnown RBP12.8□□□□□ -0.36
CLIP3-201ENST00000360535 CYP1A1P04798 512 aaPredicted RBP12.8□□□□□ -0.36
CLIP3-201ENST00000360535 PSAPP07602 524 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 MYBL1P10243 752 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 ADRA1DP25100 572 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 KLRC2P26717 231 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 CCND2P30279 289 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 HIRAP54198 1017 aaPredicted RBP12.8□□□□□ -0.36
CLIP3-201ENST00000360535 OGDHQ02218 1023 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 TAF11Q15544 211 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 STYK1Q6J9G0 422 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 ZCCHC9Q8N567 271 aaKnown RBP12.8□□□□□ -0.36
CLIP3-201ENST00000360535 EMC1Q8N766 993 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 EXD1Q8NHP7 514 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 ASAP3Q8TDY4 903 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 ZNF526Q8TF50 670 aaPredicted RBP12.8□□□□□ -0.36
CLIP3-201ENST00000360535 PYROXD1Q8WU10 500 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 ZNF570Q96NI8 536 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 SLITRK1Q96PX8 696 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 GINM1Q9NU53 330 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 PRKAG3Q9UGI9 489 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 ATP2A1O14983 1001 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 WDR46O15213 610 aaKnown RBP12.8□□□□□ -0.36
CLIP3-201ENST00000360535 UNC5CO95185 931 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 KRT19P08727 400 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 GCAP28676 217 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 BASP1P80723 227 aaKnown RBP12.8□□□□□ -0.36
CLIP3-201ENST00000360535 TFAMQ00059 246 aaKnown RBP12.8□□□□□ -0.36
CLIP3-201ENST00000360535 EMC2Q15006 297 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 ANKRD22Q5VYY1 191 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 MAGEC3Q8TD91 643 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 L3MBTL3Q96JM7 780 aaPredicted RBP12.8□□□□□ -0.36
CLIP3-201ENST00000360535 FBXL18Q96ME1 805 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 SLC9A2Q9UBY0 812 aa12.8□□□□□ -0.36
CLIP3-201ENST00000360535 C2orf71A6NGG8 1288 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 PDHA1P08559 390 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 SRGAP2CP0DJJ0 459 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 CCND1P24385 295 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 MARK3P27448 753 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 ALDH3A1P30838 453 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 TAF1BQ53T94 588 aaPredicted RBP12.79□□□□□ -0.36
CLIP3-201ENST00000360535 GPAT2Q6NUI2 795 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 TLDC1Q6P9B6 456 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 SPOCD1Q6ZMY3 1216 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 C3orf62Q6ZUJ4 267 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 CENPUQ71F23 418 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 NIPA1Q7RTP0 329 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 MTDHQ86UE4 582 aaKnown RBP12.79□□□□□ -0.36
CLIP3-201ENST00000360535 KATNAL2Q8IYT4 538 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 MCPH1Q8NEM0 835 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 MTMR12Q9C0I1 747 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 SYNCQ9H7C4 482 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 ZMYND8Q9ULU4 1186 aaPredicted RBP12.79□□□□□ -0.36
CLIP3-201ENST00000360535 COL11A2P13942 1736 aaPredicted RBP12.79□□□□□ -0.36
CLIP3-201ENST00000360535 ASMTLO95671 621 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 ACO1P21399 889 aaKnown RBP12.79□□□□□ -0.36
CLIP3-201ENST00000360535 GARTP22102 1010 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 RAD23BP54727 409 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 GDF10P55107 478 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 MYL6P60660 151 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 SNRPFP62306 86 aaKnown RBP12.79□□□□□ -0.36
CLIP3-201ENST00000360535 ANKRD20A2Q5SQ80 823 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 ANKRD20A1Q5TYW2 823 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 ANKRD20A3Q5VUR7 823 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 PALM2Q8IXS6 379 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 TTC8Q8TAM2 541 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 UTP4Q969X6 686 aaKnown RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms