RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 MAIP1Q8WWC4 291 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 STK33Q9BYT3 514 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 DCLK3Q9C098 648 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 LRRIQ3A6PVS8 624 aaPredicted RBP9.76□□□□□ -0.85
UPF2-202ENST00000357604 TMEM110-MUSTN1A8MSY1 372 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 AP1G2O75843 785 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 ABCB4P21439 1286 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 NNMTP40261 264 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 IFNAR2P48551 515 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 EEF1DP3Q658K8 133 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 TOP1MTQ969P6 601 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 ZBTB45Q96K62 511 aaPredicted RBP9.76□□□□□ -0.85
UPF2-202ENST00000357604 TRAIPQ9BWF2 469 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 CERS4Q9HA82 394 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 DMAP1Q9NPF5 467 aaPredicted RBP9.76□□□□□ -0.85
UPF2-202ENST00000357604 CPSF3Q9UKF6 684 aaKnown RBP9.76□□□□□ -0.85
UPF2-202ENST00000357604 GOLGA6L10A0A0M3HER8 536 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 NFICP08651 508 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 SOX5P35711 763 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 BST2Q10589 180 aaKnown RBP9.76□□□□□ -0.85
UPF2-202ENST00000357604 CCDC50Q8IVM0 306 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 OR8K1Q8NGG5 319 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 HDAC7Q8WUI4 952 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 MFSD1Q9H3U5 465 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 SFXN1Q9H9B4 322 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 KRT82Q9NSB4 513 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 ASNSD1Q9NWL6 643 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 TMEM63CQ9P1W3 806 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 TMCO5BA8MYB1 307 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 NRP1O14786 923 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 GFPT2O94808 682 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 OXCT1P55809 520 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 MARCH8Q5T0T0 291 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 CENPPQ6IPU0 288 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 OTOP3Q7RTS5 596 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 TMEM176AQ96HP8 235 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 BCAS3Q9H6U6 928 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 HNRNPA1P09651 372 aaKnown RBP eCLIP9.75□□□□□ -0.85
UPF2-202ENST00000357604 MBL2P11226 248 aaPredicted RBP9.75□□□□□ -0.85
UPF2-202ENST00000357604 PTPN2P17706 415 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 HARS2P49590 506 aaKnown RBP9.75□□□□□ -0.85
UPF2-202ENST00000357604 SHISA4Q96DD7 197 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 IGSF21Q96ID5 467 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 CRACR2AQ9BSW2 395 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 PLEKHA4Q9H4M7 779 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 LMCD1Q9NZU5 365 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 CCDC175P0C221 793 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 CFAP58Q5T655 872 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 PALB2Q86YC2 1186 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 ZDHHC17Q8IUH5 632 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 TDRD5Q8NAT2 981 aaKnown RBP9.75□□□□□ -0.85
UPF2-202ENST00000357604 KIAA0895Q8NCT3 520 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 KIF9Q9HAQ2 790 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 WNT7AO00755 349 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 NBNO60934 754 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 WARSP23381 471 aaKnown RBP9.75□□□□□ -0.85
UPF2-202ENST00000357604 ZBED6P86452 979 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 C11orf57Q6ZUT1 292 aaPredicted RBP9.75□□□□□ -0.85
UPF2-202ENST00000357604 SUSD3Q96L08 255 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 ZNF518BQ9C0D4 1074 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 CLDND1Q9NY35 253 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 RRN3Q9NYV6 651 aa9.75□□□□□ -0.85
UPF2-202ENST00000357604 A0A087X0B3 334 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 SPOPO43791 374 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 LRRN2O75325 713 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 ZNF75DP51815 510 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 RABGGTBP53611 331 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 MTSS1LQ765P7 747 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 POF1BQ8WVV4 589 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 PRM3Q9NNZ6 103 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 COG5Q9UP83 839 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 MRPS23Q9Y3D9 190 aaKnown RBP9.74□□□□□ -0.85
UPF2-202ENST00000357604 HES2Q9Y543 173 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 C9IYK1 514 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 CCDC122Q5T0U0 273 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 ACBD5Q5T8D3 534 aaPredicted RBP9.74□□□□□ -0.85
UPF2-202ENST00000357604 ATP6V0D2Q8N8Y2 350 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 UCMAQ8WVF2 138 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 UBE2Q2Q8WVN8 375 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 SEMA6BQ9H3T3 888 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 SAMSN1Q9NSI8 373 aaKnown RBP9.74□□□□□ -0.85
UPF2-202ENST00000357604 RASAL2Q9UJF2 1139 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 FARP1Q9Y4F1 1045 aaPredicted RBP9.74□□□□□ -0.85
UPF2-202ENST00000357604 TUBB4AP04350 444 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 USP17L7P0C7H9 530 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 YWHAQP27348 245 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 MYL6P60660 151 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 SHHQ15465 462 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.74□□□□□ -0.85
UPF2-202ENST00000357604 RBM23Q86U06 439 aaKnown RBP9.74□□□□□ -0.85
UPF2-202ENST00000357604 SMG7Q92540 1137 aaKnown RBP9.74□□□□□ -0.85
UPF2-202ENST00000357604 HAUS1Q96CS2 278 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 NAP1L3Q99457 506 aaPredicted RBP9.74□□□□□ -0.85
UPF2-202ENST00000357604 BAG1Q99933 345 aaPredicted RBP9.74□□□□□ -0.85
UPF2-202ENST00000357604 ATXN3LQ9H3M9 355 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 ZNF576Q9H609 170 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 LMAN1P49257 510 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 VSTM1Q6UX27 236 aa9.74□□□□□ -0.85
UPF2-202ENST00000357604 ADAMTS3O15072 1205 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 LSM8O95777 96 aaKnown RBP9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms