RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 HSD17B4P51659 736 aa7.69□□□□□ -1.18
VPS13A-201ENST00000355766 RBM10P98175 930 aaKnown RBP7.69□□□□□ -1.18
VPS13A-201ENST00000355766 RING1Q06587 406 aa7.69□□□□□ -1.18
VPS13A-201ENST00000355766 POSTNQ15063 836 aa7.69□□□□□ -1.18
VPS13A-201ENST00000355766 ZNF174Q15697 407 aa7.69□□□□□ -1.18
VPS13A-201ENST00000355766 CALCRLQ16602 461 aa7.69□□□□□ -1.18
VPS13A-201ENST00000355766 DUSP6Q16828 381 aa7.69□□□□□ -1.18
VPS13A-201ENST00000355766 HS1BP3Q53T59 392 aa7.69□□□□□ -1.18
VPS13A-201ENST00000355766 CELF3Q5SZQ8 465 aaKnown RBP7.69□□□□□ -1.18
VPS13A-201ENST00000355766 ARHGEF16Q5VV41 709 aa7.69□□□□□ -1.18
VPS13A-201ENST00000355766 NIPA1Q7RTP0 329 aa7.69□□□□□ -1.18
VPS13A-201ENST00000355766 C12orf40Q86WS4 652 aa7.69□□□□□ -1.18
VPS13A-201ENST00000355766 TBC1D5Q92609 795 aa7.69□□□□□ -1.18
VPS13A-201ENST00000355766 PDLIM2Q96JY6 352 aa7.69□□□□□ -1.18
VPS13A-201ENST00000355766 FAM20AQ96MK3 541 aa7.69□□□□□ -1.18
VPS13A-201ENST00000355766 PPP1R9BQ96SB3 815 aa7.69□□□□□ -1.18
VPS13A-201ENST00000355766 CDCA3Q99618 268 aaPredicted RBP7.69□□□□□ -1.18
VPS13A-201ENST00000355766 LRRC27Q9C0I9 530 aa7.69□□□□□ -1.18
VPS13A-201ENST00000355766 CPVLQ9H3G5 476 aa7.69□□□□□ -1.18
VPS13A-201ENST00000355766 RNPEPQ9H4A4 650 aa7.69□□□□□ -1.18
VPS13A-201ENST00000355766 TLE6Q9H808 572 aa7.69□□□□□ -1.18
VPS13A-201ENST00000355766 PXMP2Q9NR77 195 aa7.69□□□□□ -1.18
VPS13A-201ENST00000355766 RMND1Q9NWS8 449 aa7.69□□□□□ -1.18
VPS13A-201ENST00000355766 KDM3AQ9Y4C1 1321 aa7.69□□□□□ -1.18
VPS13A-201ENST00000355766 ARID1BQ8NFD5 2236 aaPredicted RBP7.68□□□□□ -1.18
VPS13A-201ENST00000355766 CACNA1BQ00975 2339 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 VWA3AA6NCI4 1184 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 SORBS3O60504 671 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 SRGAP2BP0DMP2 458 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 GNAT1P11488 350 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 SP100P23497 879 aaPredicted RBP7.68□□□□□ -1.18
VPS13A-201ENST00000355766 UBA7P41226 1012 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 MAPK8P45983 427 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 SARSP49591 514 aaKnown RBP7.68□□□□□ -1.18
VPS13A-201ENST00000355766 ZNF165P49910 485 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 CLCN5P51795 746 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 ADAM17P78536 824 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 MGAT3Q09327 533 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 DHX8Q14562 1220 aaKnown RBP7.68□□□□□ -1.18
VPS13A-201ENST00000355766 PUM1Q14671 1186 aaKnown RBP eCLIP7.68□□□□□ -1.18
VPS13A-201ENST00000355766 LPIN1Q14693 890 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 CAMK4Q16566 473 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 LETM2Q2VYF4 491 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 ZNF648Q5T619 568 aaPredicted RBP7.68□□□□□ -1.18
VPS13A-201ENST00000355766 HAUS3Q68CZ6 603 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 CWF19L1Q69YN2 538 aaKnown RBP7.68□□□□□ -1.18
VPS13A-201ENST00000355766 CNNM4Q6P4Q7 775 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 KCNV1Q6PIU1 500 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 SARM1Q6SZW1 724 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 NPAS4Q8IUM7 802 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 MLKLQ8NB16 471 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 RASGRP4Q8TDF6 673 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 LMBR1Q8WVP7 490 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 LINC01599Q8WXQ3 324 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 PIBF1Q8WXW3 757 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 CLIC6Q96NY7 704 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 CEP44Q9C0F1 390 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 NT5C3AQ9H0P0 336 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 S1PR5Q9H228 398 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 KCNMB3Q9NPA1 279 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 SETD4Q9NVD3 440 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 DDX25Q9UHL0 483 aaKnown RBP7.68□□□□□ -1.18
VPS13A-201ENST00000355766 NR2E1Q9Y466 385 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 SNX11Q9Y5W9 270 aa7.68□□□□□ -1.18
VPS13A-201ENST00000355766 KIAA1671Q9BY89 1806 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 C2CD4DB7Z1M9 353 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 ENPP3O14638 875 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 PER2O15055 1255 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 POLR2DO15514 142 aaKnown RBP7.67□□□□□ -1.18
VPS13A-201ENST00000355766 STAM2O75886 525 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 CHRNA1P02708 482 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 ERCC5P28715 1186 aaPredicted RBP7.67□□□□□ -1.18
VPS13A-201ENST00000355766 TPM4P67936 248 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 AMPD3Q01432 767 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 UBE3AQ05086 875 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 KCNC3Q14003 757 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 KCNB1Q14721 858 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 ANGPT1Q15389 498 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 LONRF3Q496Y0 759 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 PAN2Q504Q3 1202 aaKnown RBP7.67□□□□□ -1.18
VPS13A-201ENST00000355766 HYIQ5T013 277 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 JAKMIP3Q5VZ66 844 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 ANKRD54Q6NXT1 300 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 SYCE2Q6PIF2 218 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 FOXR2Q6PJQ5 311 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 TMEM184AQ6ZMB5 413 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 CKAP2LQ8IYA6 745 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 CCDC105Q8IYK2 499 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 FBF1Q8TES7 1133 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 FAM168AQ92567 244 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 CALML4Q96GE6 196 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 PDCD2LQ9BRP1 358 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 MFSD1Q9H3U5 465 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 SMOC2Q9H3U7 446 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 DLL3Q9NYJ7 618 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 PPM1HQ9ULR3 514 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 SAMM50Q9Y512 469 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 MYO7AQ13402 2215 aa7.67□□□□□ -1.18
VPS13A-201ENST00000355766 MYH7BA7E2Y1 1941 aa7.66□□□□□ -1.18
VPS13A-201ENST00000355766 KIAA1217Q5T5P2 1943 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms