RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 ELF3P78545 371 aaPredicted RBP13.14□□□□□ -0.31
COL6A3-203ENST00000353578 BTKQ06187 659 aa13.14□□□□□ -0.31
COL6A3-203ENST00000353578 SLC15A2Q16348 729 aa13.14□□□□□ -0.31
COL6A3-203ENST00000353578 USP13Q92995 863 aaPredicted RBP13.14□□□□□ -0.31
COL6A3-203ENST00000353578 ENO3P13929 434 aaPredicted RBP13.14□□□□□ -0.31
COL6A3-203ENST00000353578 OTUD4Q01804 1114 aaKnown RBP13.14□□□□□ -0.31
COL6A3-203ENST00000353578 KYAT1Q16773 422 aa13.14□□□□□ -0.31
COL6A3-203ENST00000353578 JAMLQ86YT9 394 aa13.14□□□□□ -0.31
COL6A3-203ENST00000353578 UNC45BQ8IWX7 931 aa13.14□□□□□ -0.31
COL6A3-203ENST00000353578 HDAC7Q8WUI4 952 aa13.14□□□□□ -0.31
COL6A3-203ENST00000353578 SLC9A2Q9UBY0 812 aa13.14□□□□□ -0.31
COL6A3-203ENST00000353578 RAPGEFL1Q9UHV5 662 aa13.14□□□□□ -0.31
COL6A3-203ENST00000353578 NEU2Q9Y3R4 380 aa13.14□□□□□ -0.31
COL6A3-203ENST00000353578 MAP2P11137 1827 aaKnown RBP13.14□□□□□ -0.31
COL6A3-203ENST00000353578 PDGFRBP09619 1106 aa13.14□□□□□ -0.31
COL6A3-203ENST00000353578 EIF4A2Q14240 407 aaKnown RBP13.14□□□□□ -0.31
COL6A3-203ENST00000353578 EXOC3L1Q86VI1 746 aa13.14□□□□□ -0.31
COL6A3-203ENST00000353578 IRS4O14654 1257 aaPredicted RBP13.14□□□□□ -0.31
COL6A3-203ENST00000353578 SARSP49591 514 aaKnown RBP13.14□□□□□ -0.31
COL6A3-203ENST00000353578 FASTKD1Q53R41 847 aaKnown RBP13.14□□□□□ -0.31
COL6A3-203ENST00000353578 ASZ1Q8WWH4 475 aa13.14□□□□□ -0.31
COL6A3-203ENST00000353578 MAPK1P28482 360 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 PTH1RQ03431 593 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 GCKRQ14397 625 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 TIPINQ9BVW5 301 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 STK33Q9BYT3 514 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 EXOSC4Q9NPD3 245 aaKnown RBP13.13□□□□□ -0.31
COL6A3-203ENST00000353578 RBM12Q9NTZ6 932 aaKnown RBP13.13□□□□□ -0.31
COL6A3-203ENST00000353578 AMACRQ9UHK6 382 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 SH2B2O14492 632 aaPredicted RBP13.13□□□□□ -0.31
COL6A3-203ENST00000353578 NR3C1P04150 777 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 CLCN2P51788 898 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 COPZ1P61923 177 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 CBX3Q13185 183 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 PIGHQ14442 188 aaPredicted RBP13.13□□□□□ -0.31
COL6A3-203ENST00000353578 TMEM110Q86TL2 294 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 NLRP10Q86W26 655 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 LRRC14Q15048 493 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 EDRF1Q3B7T1 1238 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 HABP4Q5JVS0 413 aaKnown RBP13.13□□□□□ -0.31
COL6A3-203ENST00000353578 CDC73Q6P1J9 531 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 CPSF3Q9UKF6 684 aaKnown RBP13.13□□□□□ -0.31
COL6A3-203ENST00000353578 PNMA6EA0A0J9YXQ4 647 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 M0QX08 132 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 ZFAND2BQ8WV99 257 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 DSEQ9UL01 958 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 GSAPA4D1B5 854 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 RFC5P40937 340 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 DPYSQ14117 519 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 TTC30AQ86WT1 665 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 ZNF677Q86XU0 584 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 SIX5Q8N196 739 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 C6orf62Q9GZU0 229 aaPredicted RBP13.13□□□□□ -0.31
COL6A3-203ENST00000353578 RRM2P31350 389 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 NUDT2P50583 147 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 RASA2Q15283 850 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 MZT2AQ6P582 158 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 DDIASQ8IXT1 998 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 MREGQ8N565 214 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 SH3TC2Q8TF17 1288 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 PRKAR1AP10644 381 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 SYCE2Q6PIF2 218 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 SPAG16Q8N0X2 631 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 SPDYE16A6NNV3 312 aaPredicted RBP13.13□□□□□ -0.31
COL6A3-203ENST00000353578 FGAP02671 866 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 SRGNP10124 158 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 YWHABP31946 246 aaKnown RBP13.13□□□□□ -0.31
COL6A3-203ENST00000353578 PTDSS1P48651 473 aaKnown RBP13.13□□□□□ -0.31
COL6A3-203ENST00000353578 SPDYE2Q495Y8 402 aa13.13□□□□□ -0.31
COL6A3-203ENST00000353578 KLHL8Q9P2G9 620 aaPredicted RBP13.13□□□□□ -0.31
COL6A3-203ENST00000353578 PTPRTO14522 1441 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 APOL1O14791 398 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 NOS1APO75052 506 aaPredicted RBP13.12□□□□□ -0.31
COL6A3-203ENST00000353578 RFX4Q33E94 735 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 TPTE2Q6XPS3 522 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 SPATA17Q96L03 361 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 MLXIPLQ9NP71 852 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 GPCPD1Q9NPB8 672 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 NMRK1Q9NWW6 199 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 KCNK4Q9NYG8 393 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 MKLN1Q9UL63 735 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 PACS1Q6VY07 963 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 IFNL3Q8IZI9 196 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 PROX1Q92786 737 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 ARL8AQ96BM9 186 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 PAK5Q9P286 719 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 KCNQ3O43525 872 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 UBOX5O94941 541 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 CD2BP2O95400 341 aaKnown RBP13.12□□□□□ -0.31
COL6A3-203ENST00000353578 IFNA16P05015 189 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 ZFP69Q49AA0 526 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 MIS18BP1Q6P0N0 1132 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 DBNDD2Q9BQY9 259 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 KLRF2D3W0D1 207 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 RPL26P61254 145 aaKnown RBP13.12□□□□□ -0.31
COL6A3-203ENST00000353578 SPIRE1Q08AE8 756 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 ABRAXAS1Q6UWZ7 409 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 OR6Y1Q8NGX8 325 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 ADD3Q9UEY8 706 aaKnown RBP13.12□□□□□ -0.31
COL6A3-203ENST00000353578 STAP1Q9ULZ2 295 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms