RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3A, Length 2,235 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 GPR20Q99678 358 aa23.41■■□□□ 1.34
UPF3A-201ENST00000351487 KDM4CQ9H3R0 1056 aa23.41■■□□□ 1.34
UPF3A-201ENST00000351487 DNAJC17Q9NVM6 304 aaKnown RBP23.41■■□□□ 1.34
UPF3A-201ENST00000351487 KRT1P04264 644 aa23.41■■□□□ 1.34
UPF3A-201ENST00000351487 PIGHQ14442 188 aaPredicted RBP23.41■■□□□ 1.34
UPF3A-201ENST00000351487 ATP13A4Q4VNC1 1196 aa23.41■■□□□ 1.34
UPF3A-201ENST00000351487 KCNV1Q6PIU1 500 aa23.41■■□□□ 1.34
UPF3A-201ENST00000351487 VSTM1Q6UX27 236 aa23.41■■□□□ 1.34
UPF3A-201ENST00000351487 MFSD7Q6UXD7 560 aa23.41■■□□□ 1.34
UPF3A-201ENST00000351487 SUGP1Q8IWZ8 645 aaKnown RBP23.41■■□□□ 1.34
UPF3A-201ENST00000351487 ZCCHC9Q8N567 271 aaKnown RBP23.41■■□□□ 1.34
UPF3A-201ENST00000351487 ANKS4BQ8N8V4 417 aa23.41■■□□□ 1.34
UPF3A-201ENST00000351487 KLHL11Q9NVR0 708 aa23.41■■□□□ 1.34
UPF3A-201ENST00000351487 ABHD2P08910 425 aa23.4■■□□□ 1.34
UPF3A-201ENST00000351487 GHRP10912 638 aa23.4■■□□□ 1.34
UPF3A-201ENST00000351487 NF2P35240 595 aa23.4■■□□□ 1.34
UPF3A-201ENST00000351487 OGDHQ02218 1023 aa23.4■■□□□ 1.34
UPF3A-201ENST00000351487 SPRED3Q2MJR0 410 aa23.4■■□□□ 1.34
UPF3A-201ENST00000351487 GPAT2Q6NUI2 795 aa23.4■■□□□ 1.34
UPF3A-201ENST00000351487 CHADLQ6NUI6 762 aa23.4■■□□□ 1.34
UPF3A-201ENST00000351487 PLPPR4Q7Z2D5 763 aa23.4■■□□□ 1.34
UPF3A-201ENST00000351487 PWWP2AQ96N64 755 aa23.4■■□□□ 1.34
UPF3A-201ENST00000351487 NSRP1Q9H0G5 558 aaKnown RBP23.4■■□□□ 1.34
UPF3A-201ENST00000351487 XYLT2Q9H1B5 865 aa23.4■■□□□ 1.34
UPF3A-201ENST00000351487 IVNS1ABPQ9Y6Y0 642 aa23.4■■□□□ 1.34
UPF3A-201ENST00000351487 TMEM120BA0PK00 339 aa23.4■■□□□ 1.34
UPF3A-201ENST00000351487 ARIH2O95376 493 aa23.4■■□□□ 1.34
UPF3A-201ENST00000351487 SRGAP2CP0DJJ0 459 aa23.4■■□□□ 1.34
UPF3A-201ENST00000351487 ASPAP45381 313 aa23.4■■□□□ 1.34
UPF3A-201ENST00000351487 TRPC3Q13507 836 aa23.4■■□□□ 1.34
UPF3A-201ENST00000351487 MPZL3Q6UWV2 235 aa23.4■■□□□ 1.34
UPF3A-201ENST00000351487 SPOCD1Q6ZMY3 1216 aa23.4■■□□□ 1.34
UPF3A-201ENST00000351487 TSHZ1Q6ZSZ6 1077 aa23.4■■□□□ 1.34
UPF3A-201ENST00000351487 GSTA5Q7RTV2 222 aa23.4■■□□□ 1.34
UPF3A-201ENST00000351487 WDTC1Q8N5D0 677 aa23.4■■□□□ 1.34
UPF3A-201ENST00000351487 CNKSR2Q8WXI2 1034 aa23.4■■□□□ 1.34
UPF3A-201ENST00000351487 PTPRHQ9HD43 1115 aa23.4■■□□□ 1.34
UPF3A-201ENST00000351487 CTNNAL1Q9UBT7 734 aa23.4■■□□□ 1.34
UPF3A-201ENST00000351487 DNPEPQ9ULA0 475 aa23.4■■□□□ 1.34
UPF3A-201ENST00000351487 F8VP50 259 aa23.39■■□□□ 1.34
UPF3A-201ENST00000351487 PI4K2BG5E9Z4 385 aa23.39■■□□□ 1.34
UPF3A-201ENST00000351487 DNM1LO00429 736 aa23.39■■□□□ 1.34
UPF3A-201ENST00000351487 KRT10P13645 584 aa23.39■■□□□ 1.34
UPF3A-201ENST00000351487 HNRNPH1P31943 449 aaKnown RBP23.39■■□□□ 1.34
UPF3A-201ENST00000351487 ZNF699Q32M78 642 aa23.39■■□□□ 1.34
UPF3A-201ENST00000351487 P3H1Q32P28 736 aa23.39■■□□□ 1.34
UPF3A-201ENST00000351487 EAPPQ56P03 285 aaPredicted RBP23.39■■□□□ 1.34
UPF3A-201ENST00000351487 DCUN1D2Q6PH85 259 aa23.39■■□□□ 1.34
UPF3A-201ENST00000351487 EEPD1Q7L9B9 569 aa23.39■■□□□ 1.34
UPF3A-201ENST00000351487 TAX1BP1Q86VP1 789 aa23.39■■□□□ 1.34
UPF3A-201ENST00000351487 TFAP2BQ92481 460 aa23.39■■□□□ 1.34
UPF3A-201ENST00000351487 DDX56Q9NY93 547 aaKnown RBP23.39■■□□□ 1.34
UPF3A-201ENST00000351487 SAMD15Q9P1V8 674 aa23.39■■□□□ 1.34
UPF3A-201ENST00000351487 DNALI1O14645 258 aaPredicted RBP23.39■■□□□ 1.33
UPF3A-201ENST00000351487 B4GALT4O60513 344 aa23.39■■□□□ 1.33
UPF3A-201ENST00000351487 CDH16O75309 829 aa23.39■■□□□ 1.33
UPF3A-201ENST00000351487 MARK3P27448 753 aa23.39■■□□□ 1.33
UPF3A-201ENST00000351487 STAT4Q14765 748 aa23.39■■□□□ 1.33
UPF3A-201ENST00000351487 HSDL1Q3SXM5 330 aa23.39■■□□□ 1.33
UPF3A-201ENST00000351487 CELF3Q5SZQ8 465 aaKnown RBP23.39■■□□□ 1.33
UPF3A-201ENST00000351487 TRIM50Q86XT4 487 aa23.39■■□□□ 1.33
UPF3A-201ENST00000351487 LRRC71Q8N4P6 559 aa23.39■■□□□ 1.33
UPF3A-201ENST00000351487 ALLCQ8N6M5 410 aa23.39■■□□□ 1.33
UPF3A-201ENST00000351487 FGD4Q96M96 766 aa23.39■■□□□ 1.33
UPF3A-201ENST00000351487 MPHOSPH6Q99547 160 aaKnown RBP23.39■■□□□ 1.33
UPF3A-201ENST00000351487 EURLQ9NYK6 297 aa23.39■■□□□ 1.33
UPF3A-201ENST00000351487 DRG1Q9Y295 367 aaKnown RBP23.39■■□□□ 1.33
UPF3A-201ENST00000351487 CEP83Q9Y592 693 aa23.39■■□□□ 1.33
UPF3A-201ENST00000351487 CSADQ9Y600 493 aa23.39■■□□□ 1.33
UPF3A-201ENST00000351487 hCG_1818297A0A087WSY0 165 aa23.38■■□□□ 1.33
UPF3A-201ENST00000351487 ACKR2O00590 384 aa23.38■■□□□ 1.33
UPF3A-201ENST00000351487 SOCS7O14512 581 aa23.38■■□□□ 1.33
UPF3A-201ENST00000351487 IRF6O14896 467 aa23.38■■□□□ 1.33
UPF3A-201ENST00000351487 ATF7P17544 494 aaPredicted RBP23.38■■□□□ 1.33
UPF3A-201ENST00000351487 IFNAR2P48551 515 aa23.38■■□□□ 1.33
UPF3A-201ENST00000351487 YWHAEP62258 255 aaKnown RBP23.38■■□□□ 1.33
UPF3A-201ENST00000351487 TFAMQ00059 246 aaKnown RBP23.38■■□□□ 1.33
UPF3A-201ENST00000351487 ZNF394Q53GI3 561 aa23.38■■□□□ 1.33
UPF3A-201ENST00000351487 STRIP2Q9ULQ0 834 aa23.38■■□□□ 1.33
UPF3A-201ENST00000351487 CNMDO75829 334 aa23.37■■□□□ 1.33
UPF3A-201ENST00000351487 IRX3P78415 501 aaPredicted RBP23.37■■□□□ 1.33
UPF3A-201ENST00000351487 TFDP3Q5H9I0 405 aa23.37■■□□□ 1.33
UPF3A-201ENST00000351487 KAZNQ674X7 775 aa23.37■■□□□ 1.33
UPF3A-201ENST00000351487 POLNQ7Z5Q5 900 aa23.37■■□□□ 1.33
UPF3A-201ENST00000351487 ERICH1Q86X53 443 aa23.37■■□□□ 1.33
UPF3A-201ENST00000351487 NKD2Q969F2 451 aaPredicted RBP23.37■■□□□ 1.33
UPF3A-201ENST00000351487 RBM15Q96T37 977 aaKnown RBP eCLIP23.37■■□□□ 1.33
UPF3A-201ENST00000351487 SGIP1Q9BQI5 828 aa23.37■■□□□ 1.33
UPF3A-201ENST00000351487 FZD8Q9H461 694 aa23.37■■□□□ 1.33
UPF3A-201ENST00000351487 ACTL7BQ9Y614 415 aa23.37■■□□□ 1.33
UPF3A-201ENST00000351487 A0A0G2JLL6 359 aaPredicted RBP23.37■■□□□ 1.33
UPF3A-201ENST00000351487 CCT8L1PA6NM43 557 aa23.37■■□□□ 1.33
UPF3A-201ENST00000351487 VIMP08670 466 aaKnown RBP23.37■■□□□ 1.33
UPF3A-201ENST00000351487 WEE2P0C1S8 567 aa23.37■■□□□ 1.33
UPF3A-201ENST00000351487 CREB1P16220 341 aa23.37■■□□□ 1.33
UPF3A-201ENST00000351487 OASLQ15646 514 aaKnown RBP23.37■■□□□ 1.33
UPF3A-201ENST00000351487 GADL1Q6ZQY3 521 aa23.37■■□□□ 1.33
UPF3A-201ENST00000351487 PRRT2Q7Z6L0 340 aaPredicted RBP23.37■■□□□ 1.33
UPF3A-201ENST00000351487 RIBC1Q8N443 379 aaPredicted RBP23.37■■□□□ 1.33
UPF3A-201ENST00000351487 CCDC77Q9BR77 488 aa23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms